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Lacinutrix jangbogonensis sp. nov., a psychrophilic bacterium isolated from Antarctic marine sediment and emended description of the genus Lacinutrix

Cited 16 time in Web of Science Cited 18 time in Scopus
Authors
Lee, Yung Mi; Hwang, Chung Yeon; Lee, Inae; Jung, You-Jung; Cho, Yirang; Baek, Kiwoon; Hong, Soon Gyu; Kim, Ji-Hee; Chun, Jongsik; Lee, Hong Kum
Issue Date
2014-09
Citation
Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, Vol.106 No.3, pp.527-533
Keywords
Lacinutrix jangbogonensis sp nov.Polyphasic taxonomy
Abstract
A Gram-negative, strictly aerobic, non-motile, rod-shaped and psychrophilic bacterial strain, PAMC 27137(T), was isolated from the marine sediment of the Ross Sea, Antarctica. Strain PAMC 27137(T) was observed to grow at 4-10 A degrees C, at pH 6.5-7.5 and in the presence of 2.5-4.0 % (w/v) sea salts. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain PAMC 27137(T) belongs to the genus Lacinutrix showing the high similarities with Lacinutrix mariniflava JCM 13824(T) (97.6 %) and Lacinutrix algicola JCM 13825(T) (97.1 %). Genomic relatedness analyses based on the average nucleotide identity and the genome-to-genome distance showed that strain PAMC 27137(T) is clearly distinguished from the most closely related Lacinutrix species. The major fatty acids (> 5 %) were identified as iso-C-15:1 G (19.9 %), iso-C-15:0 (19.3 %), iso-C-17:0 3-OH (11.3 %), summed feature 9 (C-16:0 10-methyl and/or iso-C-17:1 omega 9c as defined by MIDI, 9.1 %), iso-C-15:0 3-OH (7.5 %), and anteiso-C-15:1 A (5.8 %). The polar lipids were found to consist of phosphatidylethanolamine, an unidentified aminolipid, an unidentified aminophospholipid, and five unidentified phospholipids. The major respiratory quinone was identified as MK-6. The genomic DNA G+C content was determined to be 32.1 mol%. Based on the data from this polyphasic taxonomic study, strain PAMC 27137(T) is considered to represent a novel species of the genus Lacinutrix, for which the name Lacinutrix jangbogonensis sp. nov. is proposed. The type strain is PAMC 27137(T) (=KCTC 32573(T)=JCM 19883(T)).
ISSN
0003-6072
URI
http://hdl.handle.net/10371/165782
DOI
https://doi.org/10.1007/s10482-014-0221-5
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College of Natural Sciences (자연과학대학)Dept. of Biological Sciences (생명과학부)Journal Papers (저널논문_생명과학부)
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