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The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice

Cited 307 time in Web of Science Cited 321 time in Scopus
Authors
Lee, Byoung-Moo; Park, Young-Jin; Park, Dong-Suk; Kang, Hee-Wan; Kim, Jeong-Gu; Song, Eun-Sung; Park, In-Cheol; Yoon, Ung-Han; Hahn, Jang-Ho; Koo, Bon-Sung; Lee, Gil-Bok; Kim, Hyungtae; Park, Hyun-Seok; Yoon, Kyong-Oh; Kim, Jeong-Hyun; Jung, Chol-hee; Koh, Nae-Hyung; Seo, Jeong-Sun; Go, Seung-Joo
Issue Date
2005-01-28
Publisher
Oxford University Press
Citation
Nucleic Acids Res. 2005 Jan 26;33(2):577-86. Print 2005.
Keywords
Base SequenceDNA Transposable Elements*Genome, BacterialGenomicsMolecular Sequence DataOryza sativa/*microbiologyPlant Diseases/microbiologyPolysaccharides, Bacterial/biosynthesisVirulence Factors/*geneticsXanthomonas/*genetics/metabolism/*pathogenicity
Abstract
The nucleotide sequence was determined for the genome of Xanthomonas oryzae pathovar oryzae (Xoo) KACC10331, a bacterium that causes bacterial blight in rice (Oryza sativa L.). The genome is comprised of a single, 4 941 439 bp, circular chromosome that is G + C rich (63.7%). The genome includes 4637 open reading frames (ORFs) of which 3340 (72.0%) could be assigned putative function. Orthologs for 80% of the predicted Xoo genes were found in the previously reported X.axonopodis pv. citri (Xac) and X.campestris pv. campestris (Xcc) genomes, but 245 genes apparently specific to Xoo were identified. Xoo genes likely to be associated with pathogenesis include eight with similarity to Xanthomonas avirulence (avr) genes, a set of hypersensitive reaction and pathogenicity (hrp) genes, genes for exopolysaccharide production, and genes encoding extracellular plant cell wall-degrading enzymes. The presence of these genes provides insights into the interactions of this pathogen with its gramineous host.
ISSN
1362-4962 (Electronic)
Language
English
URI
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15673718

http://hdl.handle.net/10371/25959
DOI
https://doi.org/10.1093/nar/gki206
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College of Medicine/School of Medicine (의과대학/대학원)Dept. of Biochemistry & Molecular Biology (생화학교실)Journal Papers (저널논문_생화학교실)
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