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Functional and Regulatory Characteristics of Vibrio vulnificus Alkyl Hydroperoxide Reductase (AhpC1) and Catalase (KatG) : 패혈증 비브리오균의 항산화효소 alkyl hydroperoxide reductase와 catalase의 기능특성과 조절기전 연구
DC Field | Value | Language |
---|---|---|
dc.contributor.advisor | 최상호 | - |
dc.contributor.author | 이현성 | - |
dc.date.accessioned | 2017-07-13T08:19:30Z | - |
dc.date.available | 2017-07-13T08:19:30Z | - |
dc.date.issued | 2013-08 | - |
dc.identifier.other | 000000013703 | - |
dc.identifier.uri | https://hdl.handle.net/10371/119446 | - |
dc.description | 학위논문 (박사)-- 서울대학교 대학원 : 농생명공학부, 2013. 8. 최상호. | - |
dc.description.abstract | Pathogens have evolved sophisticated mechanisms to survive oxidative stresses imposed by host defense systems, and the mechanisms are closely linked to their virulence. In the present study, ahpC1 and katG, homologues of E. coli ahpC encoding a peroxiredoxin and katG encoding a bifunctional catalase-peroxidase, respectively, were identified among the Vibrio vulnificus genes specifically induced by exposure to H2O2. The ahpC1 mutant was susceptible to various oxidative stress induced by H2O2, tert-butyl hydroperoxide (t-BOOH), and cumene hydroperoxide (CHP). In contrast, the katG mutant was more sensitive to H2O2 than the ahpC1 mutant and was not sensitive to oxidative stress induced by t-BOOH and CHP. The purified AhpC1 reduced H2O2 and t-BOOH in the presence of AhpF and NADH as a hydrogen donor. It revealed that V. vulnificus AhpC1 is a NADH-dependent peroxiredoxin and constitutes a peroxide reductase system with AhpF. In addition, the catalase activity of KatG was determined using native polyacrylamide gel electrophoresis, indicating that V. vulnificus KatG has an antioxidant function against H2O2. Compared to wild type, the ahpC1 and katG mutants exhibited less cytotoxicity toward INT-407 epithelial cells in vitro and reduced virulence in a mouse model. To define the promoters of ahpC1 and katG, PahpC1 and PkatG, primer extensions were performed, showing that the transcriptional start sites of ahpC1 and katG were determined and putative -10 and -35 regions of the promoters were predicted. In addition, there were OxyR binding consensus sequences located in the upstream of -35 regions of PahpC1 and PkatG. In order to verify whether the redox sensing transcriptional regulator, OxyR, regulates the expression levels of ahpC1 and katG in V. vulnificus, qRT-PCR was performed using the RNA derived from wild type and the oxyR mutant treated with H2O2. The results showed that the expression levels of both ahpC1 and katG in the oxyR mutant were significantly reduced as compared to those in the wild type. It indicated that the expression of ahpC1 and katG is positive regulated by OxyR under oxidative stress. Both gel mobility shift assay and DNase I footprinting experiment using either oxidized or reduced OxyR revealed that the two forms of OxyR binds to the OxyR binding consensus sequences located in the PahpC1 and PkatG. Interestingly, reduced OxyR bound to the -35 region of PahpC1 and -10 region of PkatG, indicating that the reduced OxyR may block RNA polymerase binding to the PahpC1 and PkatG. In order to confirm that the expression of ahpC1 and katG was repressed by reduced OxyR, C199S-OxyR mutant, mimicking reduced OxyR, was constructed and then qRT-PCR was performed using the RNA isolated from wild type and C199S-OxyR mutant treated with H2O2. Compared to the expression levels of ahpC1 and katG in wild type, those in C199S-OxyR mutant were significantly reduced, indicating that reduced OxyR repressed the expression of ahpC1 and katG. In some bacteria, it has been known that ahpC and ahpF are an operon. In order to confirm whether the V. vulnificus ahpC1 and ahpF genes are an operon, northern blot analysis was performed, indicating that transcription of ahpC1F results in two different transcripts, ahpC1 transcript and ahpC1F transcript. Mutational analysis of the regulatory region suggested that the ahpC1F operon has a single promoter, PahpC1. These results indicated that the ahpC1 transcript results from attenuation of the ahpC1F transcript at the ahpC1 and ahpF intergenic region. The 3end of ahpC1 transcript was determined by 3RACE and a potential stem-loop structure responsible for the transcriptional attenuation was predicted in the ahpC1 and ahpF intergenic region. To confirm whether the transcription of ahpC1F can be attenuated by the stem-loop structure, a reporter containing the PahpC1 fused to promoterless lux genes was constructed. Several DNA fragments of the ahpC1 and ahpF intergenic region were inserted downstream of PahpC1, and only the DNA fragment containing the predicted stem-loop structure had the reporter RLU reduced. These results indicated that the ahpC1F operon is regulated by a single promoter and the ahpC1 and ahpF intergenic region attenuator. | - |
dc.description.tableofcontents | Abstract I
Contents V List of Tables IX List of Figures IX Chapter I. Introduction 1 I-1. Vibrio vulnificus 2 I-2. Oxidative stress 3 I-3. The object of this study 4 Chapter II. Characterization of Vibrio vulnificus ahpC1 and katG induced under oxidative stress 12 II-1. Introduction 13 II-2. Materials and Methods 17 II-2-1. Strains, plasmids, and culture media 17 II-2-2. Identification of V. vulnificus ahpC1 and katG 17 II-2-3. Generation of the ahpC1 mutant by allelic exchange 18 II-2-4. Survival of the V. vulnificus strains under hydrogen peroxide 18 II-2-5. Spotting assay 19 II-2-6. Overexpression and purification of V. vulnificus AhpC1 and AhpF 19 II-2-7. Peroxide reductase activity of AhpC1 20 II-2-8. Detection of catalase by native gel electrophoresis 21 II-2-9. Cytotoxicity assay 21 II-2-10. Determination of mouse mortality 22 II-2-11. Data analyses 22 II-3. Results 23 II-3-1. Construction and confirmation of the V. vulnificus ahpC1 mutant 23 II-3-2. Effects of the ahpC1 and katG mutation on the survival of V. vulnificus under H2O2 23 II-3-3. Effects of the ahpC1 and katG mutation on the survival of V. vulnificus under organic peroxide 26 II-3-4. Alkyl hydroperoxide reductase activity of AhpC1 27 II-3-5. Detection of catalase by native gel electrophoresis 31 II-3-6. AhpC1 and KatG are required for cytotoxicity toward epithelial cells in vitro 31 II-3-7. Virulence of ahpC1 and katG in mice 32 II-4. Discussion 36 II-5. Acknowledgements 41 Chapter III. Regulation of the expression of ahpC1 and katG by Vibrio vulnificus OxyR 42 III-1. Introduction 43 III-2. Materials and Methods 46 III-2-1. Strains, plasmids, and culture conditions 46 III-2-2. RNA purification and primer extension analysis 46 III-2-3. Quantitative real-time PCR 47 III-2-4. Overexpression and Purification of V. vulnificus OxyR 48 III-2-5. Electrophoretic mobility shift assay (EMSA) 48 III-2-6. DNase I footprinting experiment 49 III-3. Results 50 III-3-1. Primer extension and the promoter sequence analysis 50 III-3-2. Transcriptional regulation of ahpC1 and katG by oxidized OxyR 53 III-3-3. EMSA for oxidized OxyR binding to the ahpC1 and katG regulatory regions 54 III-3-4. Identification of the oxidized OxyR binding site using DNase I footprinting experiment 56 III-3-5. EMSA for reduced OxyR binding to the ahpC1 and katG regulatory regions 59 III-3-6. Identification of the reduced OxyR binding site using DNase I footprinting experiment 59 III-3-7. Transcriptional regulation of ahpC1 and katG by C199S-OxyR mutant 60 III-4. Discussion 65 Chapter IV. Molecular analysis of promoter and intergenic region attenuator of the Vibrio vulnificus ahpC1F Operon 67 IV-1. Introduction 68 IV-2. Materials and Methods 70 IV-2-1. Strains, plasmids, and culture conditions 70 IV-2-2. RNA purification and northern blot analysis of the ahpC1F genes 70 IV-2-3. PCR-directed linker scanning mutagenesis 71 IV-2-4. RNA ligase mediated amplification of cDNA 3ends 72 IV-2-5. Construction of set of ahpC1F intergenic region-lux reporter genes transcriptional fusions 72 IV-3. Results 74 IV-3-1. Genetic organization of the ahpC1F operon transcribed into two transcripts 74 IV-3-2. Transcript ahpC1 and ahpC1F are generated by the same promoter 76 IV-3-3. Determination of the 3end of ahpC1 transcript by 3RACE 77 IV-3-4. RNA secondary structure prediction of the ahpC1F intergenic region 80 IV-3-5. Transcription termination analysis of ahpC1F intergenic region 80 IV-4. Discussion 85 Chapter V. Conclusion. 88 References 93 국문초록 101 | - |
dc.format | application/pdf | - |
dc.format.extent | 2204182 bytes | - |
dc.format.medium | application/pdf | - |
dc.language.iso | en | - |
dc.publisher | 서울대학교 대학원 | - |
dc.subject | Vibrio vulnificus | - |
dc.subject | AhpC1 | - |
dc.subject | KatG | - |
dc.subject | oxidative stress | - |
dc.subject | OxyR | - |
dc.subject | AhpF | - |
dc.subject.ddc | 630 | - |
dc.title | Functional and Regulatory Characteristics of Vibrio vulnificus Alkyl Hydroperoxide Reductase (AhpC1) and Catalase (KatG) | - |
dc.title.alternative | 패혈증 비브리오균의 항산화효소 alkyl hydroperoxide reductase와 catalase의 기능특성과 조절기전 연구 | - |
dc.type | Thesis | - |
dc.contributor.AlternativeAuthor | Lee, Hyun Sung | - |
dc.description.degree | Doctor | - |
dc.citation.pages | X, 104 | - |
dc.contributor.affiliation | 농업생명과학대학 농생명공학부 | - |
dc.date.awarded | 2013-08 | - |
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