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알파-시뉴클린 상호작용성 분자들의 생물학적 의의와 질환치료 및 센서 개발 응용 연구 : Biological and Therapeutic Implications of α-Synuclein Interactive Molecules and Their Application in Sensor Development

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dc.contributor.advisor백승렬-
dc.contributor.author양지은-
dc.date.accessioned2017-07-13T08:42:31Z-
dc.date.available2017-07-13T08:42:31Z-
dc.date.issued2016-02-
dc.identifier.other000000131999-
dc.identifier.urihttps://hdl.handle.net/10371/119772-
dc.description학위논문 (박사)-- 서울대학교 대학원 : 공과대학 화학생물공학부, 2016. 2. 백승렬.-
dc.description.abstractα-Synuclein, amyloidogenic protein, is a major component of Lewy bodies which are commonly observed in Parkinsons disease patients. Oligomeric intermediates which are observed during amyloidogenesis of this protein are assembled into various fibrillar structures via specific pathway called unit assembly. These amyloid fibrils have different physicochemical properties corresponding to amyloid polymorphism. Furthermore, unit assembly of α-synuclein oligomers on the surface of liposome induces the formation of radiating amyloid fibrils, resulting disruption of lipid membrane structure. Therefore, it can be considered that unit assembly of oligomers on the lipid membrane is the cause of α-synuclein-mediated cellular degeneration in a molecular level.
In this study, α-synuclein interactive molecules have been investigated in order to control the oligomer-mediated cytotoxicity. First of all, mutual effect of α-synuclein and protein partners such as firefly luciferase (LUC) and glutathione peroxidase-1 (GPX-1) are investigated to unveil their involvement in the PD pathogenesis in terms of fibrillar polymorphism and cellular antioxidant defense mechanism. First of all, LUC and GPX-1 bind to α-synuclein with Kd of 8.1 μM and 17.3 nM, respectively and they are shown to accelerate the fibrillation and induce amyloid polymorphism of α-synuclein by acting as a novel template. In case of LUC-directed amyloid fibrils, altered morphological characteristics were inherited to next-generations via nucleation-dependent fibrillation process. The seed control, therefore, would be an effective means to modify amyloid fibrils with different biochemical characteristics. In addition, the LUC-directed amyloid fibrillar polymorphism also suggests that other cellular biomolecules are able to diversify amyloid fibrils, which could be self-propagated with diversified biological activities, if any, inside cells. Mutual interactions of α-synuclein and GPX-1 contributed to not only accelerated α-synuclein fibrillation but also enhancement of GPX-1 activity. Furthermore, the entrapped GPX-1 in the fibrillar meshwork of α-synuclein was protected in a latent form and its activity was fully recovered as released from the matrix. Therefore, novel defensive roles of α-synuclein and its amyloid fibrils against oxidative stress are suggested as the GPX-1 stimulator and the active depot for the enzyme, respectively.
In this study, several phenolic compounds are examined to control the effects of oligomeric species on cellular membrane and cell viability. First of all, specific oligomer which is β-sheet free, can be assembled into curly amyloid fibril (CAF) through repetitive membrane filtration and instantly transform into radiating amyloid fibril (RAF) on phosphatidylcholine liposome is defined as active oligomer. The changes of tyrosine intrinsic fluorescence of α-synuclein have shown that phenolic compounds such as resveratrol (RSV), curcumin (CUR) and (-)-epigallocatechin gallate (EGCG) directly interact with α-synuclein with Kd of 30.4 mM, 133 mM and 100 mM, respectively. According to the Coomassie Brilliant Blue-stained SDS-PAGE and CD spectroscopy, phenolic compounds have significant influences on the fibrillation of α-synuclein by either facilitating the formation of compact oligomers or accelerating the formation of amyloid fibrils with high β-sheet contents. Furthermore, phenolic compounds could effectively control the formation of CAF and RAF and then reduce the cytotoxicity of active oligomer.
Robust polydiacetylene-based colorimetric sensing material has been developed with amyloid fibrils of α-synuclein in the presence of 10,12-pentacosadiynoic acid (PCDA) by taking advantage of specific fatty acid interaction of α-synuclein and structural regularity of the self-assembled product of amyloid fibrils. PCDA facilitated not only self-oligomerization of α-synuclein but also its fibrillation into the fibrils with increased thickness. Upon UV irradiation, the PCDA-containing amyloid fibrils (AF/PCDA) turned to blue, which then became red following heat treatment. The blue-to-red color transition was also observed with other stimuli of pH and ethanol. AF/PCDA were demonstrated to be mechanically stable since not only the individual colors of blue and red but also their colorimetric transition were not affected by a number of sonications which readily disrupted the polydiacetylene (PDA) vesicles with instant loss of the colors. Therefore, AF/PCDA can be considered as a novel PDA-based colorimetric sensing material with high mechanical strength, which has potential to be employed in various areas involving advanced sensing technologies. Furthermore, litmus-type sensors capable of detecting temperature and organic solvents have been developed with α-synuclein amyloid fibrils and PCDA. The PCDA molecules localized on the amyloid fibrils through either co-incubation with monomeric α-synuclein (AF/PCDA) or simple mixing with the pre-made α-synuclein amyloid fibrils (AF+PCDA) were photopolymerized with UV to exhibit blue color on paper. The paper sensors prepared with AF/PCDA and AF+PCDA showed distinctive sensitivities toward temperature and solvents. The less tight binding of PCDA to amyloid fibrils and thus increased its molecular freedom would be responsible for the discrete sensing property. In addition, the AF+PCDA sensor was demonstrated to successfully follow ascending temperature change, which could allow the litmus-type sensor to monitor thermal history of materials. Taken together, the amyloid fibrils of α-synuclein are shown to be a decent template for PCDA to develop into the litmus-type thermochromic and solvatochromic sensors.
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dc.description.tableofcontentsPart I. Biological and Therapeutic Implications of α-Synuclein Interactive Molecules 1
I. Introduction 1
1. Amyloidogenesis 1
2. Parkinsons disease and α-synuclein 3
3. Mechanism of amyloidogenesis 6
4. α-Synuclein, an intrinsically unstructured protein (IUP) 8
5. Neurotoxicity of α-synuclein oligomers 13
6. α-Synuclein interactive molecules 14
6-1. Firefly luciferase 15
6-2. Glutathione peroxidase 15
6-3. Natural phenolic compounds 18
II. Experimental Section 20
1. Purification of α-synuclein 20
2. Firefly luciferase assay 22
3. Thioflavin-T binding fluorescence assay 22
4. JC-1 binding fluorescence assay 23
5. Quantification of the remaining monomers after fibrillation 23
6. Transmission electron microscopy (TEM) 23
7. Attenuated total reflectance-Fourier transformation infrared (ATR-FTIR) spectrophotometer 24
8. 8-anilino-1-naphthalenesulfonic acid (ANS) binding fluorescence assay 24
9. Self-propagation experiment 25
10. Glutathione peroxidase-1 (GPX-1) assay 25
11. Immunochemical analysis 26
12. Intrinsic fluorescence of α-synuclein 27
13. Liposome synthesis 27
14. Cytotoxicity assay 28
15.Dynamic light scattering (DLS) 28
16. Circular dichroism (CD) spectroscopy 30
III. Results and Discussion 30
1. Molecular interaction of α-synuclein and firefly luciferase contributes to the amyloid polymorphism of α-synuclein 30
1-1. α-Synuclein enhances the activity of firefly luciferase 31
1-2. Firefly luciferase accelerates the fibrillation of α-synuclein and induces the amyloid polymorphism 33
1-3. Active Conformation of luciferase plays a critical role on the acceleration of α-synucelin fibrillation 37
1-4. Self-propagation of the altered morphology of α-synuclein fibrils prepared with luciferase 41
2. Mutual influences of α-synuclein and glutathione peroxidase 46
2-1. α-Synuclein enhances antioxidant activity of glutathione peroxidase-1 (GPX-1) 46
2-2. GPX-1 accelerates amyloid fibrillation of α-synuclein 50
2-3. Entangled fibrillar aggregates of α-synuclein acting as a depot for active GPX-1 53
3. Effects of phenolic compounds on assemble of α-synuclein 60
3-1. Molecular interaction between α-synuclein and phenolic compounds 60
3-2. Interference of phenolic compounds in detecting amyloid formation with thioflavin-T binding fluorescence method 62
3-3. Phenolic compounds have influences on fibrillation of α-synuclein 70
4. Control of the unit assembly of α-synuclein active oligomers 77
4-1. Definition of α-synuclein active oligomer 77
4-1-1. Fibrillation of α-synuclein 77
4-1-2. Active oligomers are rapidly assembled into curly amyloid fibril (CAF) via repetitive membrane filtration 77
4-1-3. Radiating amyloid fibril formation of active oligomer on the surface of lipid membrane 80
4-2. Effects of α-synuclein interacting molecules on the unit assembly of active oligomer 85
4-2-1. Curly amyloid fibril formation in the presence of α-synuclein interacting molecules 85
4-2-2. Radiating amyloid fibril formation in the presence of EGCG 88
IV. Conclusions 93

Part II. Colorimetric Sensor Development with α-Synuclein Amyloid Fibrils and Polydiacetylene 96
I. Introduction 96
1. Polydiacetylene-based colorimetric sensors 96
2. Amyloid fibrils in material science 98
II. Experimental Section 99
1. Oligomerization of α-synuclein in the presence of 10,12-pentacosadiynoic acid (PCDA) 99
2. Dissociation constant (Kd) between α-synuclein and PCDA 99
3. Fibrillation of α-synuclein in the absence and presence of PCDA 100
4. Preparation and characterization of AF/PCDA 101
5. Preparation of poly-PCDA vesicles 102
6. Colorimetric responses of AF/PCDA and poly-PCDA vesicles to temperature, pH, and ethanol 102
7. Mechanical stability of AF/PCDA, poly-PCDA vesicles, and AF against sonication 104
8. Preparation of litmus-type sensors with amyloid fibrils and PCDA 105
9. Colorimetric and fluorescent responses of the litmus-type sensors to temperature and organic solvents 105
10. Monitoring of heat progress and detection of localized heating 106
11. Tightness of the PCDA binding to amyloid fibrils 106
III. Results and Discussion 107
1. Stimuli-responsive biomaterials from α-synuclein amyloid fibril 107
1-1. Molecular interaction between α-synuclein and PCDA 107
1-2. Chromic and fluorescent properties of AF/PCDA 113
1-3. Stimuli-responsive amyloid fibrils 116
1-4. Enhanced stability of AF/PCDA against mechanical stress 121
2. Litmus-type biosensor based on the PCDA-containing amyloid fibrils 127
2-1. Colorimetric transition of the PCDA-containing amyloid fibrils of α-synuclein layered on paper 127
2-2. Paper-based colorimetric thermal responses of AF/PCDA and AF+PCDA and their applications 130
2-3. Interaction between PCDA and amyloid fibrils within AF/PCDA and AF+PCDA 134
2-4. Colorimetric response of the litmus-type sensor to organic solvents 137
IV. Conclusions 140

References 141

국문 초록 167
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dc.formatapplication/pdf-
dc.format.extent5836017 bytes-
dc.format.mediumapplication/pdf-
dc.language.isoen-
dc.publisher서울대학교 대학원-
dc.subjectα-Synuclein-
dc.subjectActive oligomer-
dc.subjectUnit-assembly-
dc.subjectα-Synuclein interactive molecules-
dc.subjectPolydiacetylene-
dc.subjectAmyloid-based sensor-
dc.subject.ddc660-
dc.title알파-시뉴클린 상호작용성 분자들의 생물학적 의의와 질환치료 및 센서 개발 응용 연구-
dc.title.alternativeBiological and Therapeutic Implications of α-Synuclein Interactive Molecules and Their Application in Sensor Development-
dc.typeThesis-
dc.contributor.AlternativeAuthorJee Eun Yang-
dc.description.degreeDoctor-
dc.citation.pages186-
dc.contributor.affiliation공과대학 화학생물공학부-
dc.date.awarded2016-02-
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