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Relationship between polyamine and methylglyoxalin the cell elongation of Bacillus subtilis : Bacillus subtilis에서 세포 신장에 관여하는 polyamine과 methylglyoxal의 관계

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dc.contributor.advisor강사욱-
dc.contributor.author송성현-
dc.date.accessioned2017-07-14T00:50:44Z-
dc.date.available2017-07-14T00:50:44Z-
dc.date.issued2015-08-
dc.identifier.other000000067240-
dc.identifier.urihttps://hdl.handle.net/10371/121429-
dc.description학위논문 (박사)-- 서울대학교 대학원 : 생명과학부, 2015. 8. 강사욱.-
dc.description.abstractMethylglyoxal is the metabolic intermediate and acts as a growth- or division inhibitor in cells. This ?-ketoaldehyde, which have been recognized as the advanced glycation end product precursors such as glyoxal, methylglyoxal and deoxyglucosone, have been suggested to be regulated by endogenous or exogenous polyamines. Polyamines, which are abundant compounds in cells from bacteria to mammals, generally participate in various cell physiology such as the cell growth, division and differentiation.
Herein, the methylglyoxal was observed to react with several types of polyamines in vitro resulting from the electron paramagnetic resonance spectroscopy. To investigate the physiological function and relationship of both methylglyoxal and polyamines in Bacillus subtilis, polyamine biosynthesizing-genes such as speA, speB, and yaaO encoding the arginine decarboxylase, agmatinase, and lysine decarboxylase, were disrupted or overexpressed respectively. The growth rate was slightly retarded in all of the polyamine-deficient strains compared to wild-type cells. Additionally, the significant growth defect was observed in the speBOE and yaaOOE strains not in the case of the speAOE strain. The intracellular methylglyoxal content increased 2.5- to 3-fold in the speBOE and yaaOOE strains compared to the reference strain. In addition, the mgsA gene expression, which is supposed to encode methylglyoxal synthase based on the genome database of B. subtilils, increased in the speBOE and yaaOOE strains. Based on these observations of the changes in the cell physiology in these cells, we microscopically examined whether the effect of the increased methylglyoxal or polyamine content might affect the cellular morphology. Over 60% of the elongated cells were observed in the speBOE and yaaOOE strains contrast to the reference strain. The expression of actin-like mreB, which codes a protein involved in the cell elongation predominantly in prokaryotes, increased in the speBOE and yaaOOE strains. These results indicated that methylglyoxal accumulation by the mgsA gene expression in the speBOE and yaaOOE strains caused the growth inhibition and altered the cell morphology by triggering mreB expression.
To reveal the relationship between cellular methylglyoxal and cell shape formation under other experimental conditions, Bacillus methylglyoxal synthase was purified using the Escherichia coli recombinant protein fused with the pET3a vector system. The Km and kcat values for Bacillus methylglyoxal synthase activity were revealed to be 3.17 mM and 0.009 (s-1) respectively, when using dihydroxyacetone phosphate as a major substrate. The optimal temperature and pH for the Bacillus methylglyoxal synthase activity were observed 40?C and 5.5, respectively and furthermore native molecular mass was calculated as a dimeric form. Bacillus methylglyoxal synthase activity decreased in an exogenous phosphate compounds concentration-dependent manner. These results indicated that Bacillus methylglyoxal synthase encoded by the mgsA gene catalyze dihydroxyacetone phosphate into methylglyoxal and showed a different biochemical properties compared to other bacterial proteins.
Interestingly, the mgsAOE cells showed a drastic increase in the cellular methylglyoxal content ranging from 2.5- to 3.5-fold higher compared to a reference strain. The cell growth and viability were also significantly inhibited in the mgsAOE strain. Likewise in the speBOE or yaaOOE strains, the cell length in the mgsAOE strain was observed ranging from 2.5- to 3-fold longer than the reference strain. Additionally, the mreB gene expression increased similar to the speBOE or yaaOOE strains in similar to the mgsAOE strain.
Taken together, these results suggested that cellular methylglyoxal and polyamines are involved in the cell elongation as important factors reciprocally during the B. subtilis cell growth.
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dc.description.tableofcontentsCONTENTS

ABSTRACT i
CONTENTS iv
List of Tables ix
List of Figures x
List of Abbreviations xii

I. INTRODUCTION 1
1. Methylglyoxal 2
1.1. Chemical property of methylglyoxal 2
1.2. Effects of methylglyoxal in organisms 2
1.2.1. Inhibition of cell growth by methylglyoxal 2
1.2.2. Formation of advanced glycation end-products (AGEs) 4
1.2.3. Generation of the reactive oxygen species 5
1.3. Methylglyoxal metabolism 6
1.3.1. Non-enzymatic conversion of methylglyoxal 6
1.3.2. Enzymatic synthesis of methylglyoxal 6
1.3.3. Methylglyoxal detoxification in organisms 7
2. Polyamines 10
2.1. Polyamine overview 10
2.2. The enzymatic synthesis of polyamines 12
2.3. The functions of polyamine in bacteria 15
2.3.1. Interaction of polyamine and nucleic acid 15
2.3.2. Free radical scavengers by polyamine 15
2.3.3. Acid resistance by polyamine- 16
2.3.4. Interaction cell wall and polyamines 16
2.3.5. Siderophore and virulence with polyamines 17
2.3.6. Role of polyamine to biofilm formation 17
3. Bacillus subtilis 18
4. Cell size regulation in Bacillus 20
4.1. Overview 20
4.2. Molecular regulation of cell size in Bacillus 21
5. Aims of this study 25

II. MATERIALS AND METHODS 27
1. Materials 28
2. Methods 28
2.1. Bacterial strains and culture conditions 28
2.2. Media 31
2.3. General DNA manipulation 31
2.3.1. Polymerase Chain Reaction (PCR) and DNA sequencing 31
2.3.2. Cloniong 33
2.3.3. Transformation 33
2.3.3.1. E. coli 33
2.3.3.2. Bacillus subtilis 33
2.3.4. Constructs for mutants 37
2.4. RNA analysis 37
2.4.1. Preparation of RNA from B. subtilis -- 37
2.4.2. Northern blot analysis 38
2.5. Protein analysis 38
2.5.1. Preparation of the cell crude 38
2.5.2. Western blot analysis 39
2.6. Purification of methylglyoxal synthase (MGS) and determination of biochemical properties 40
2.6.1. Overproduction and purification of MGS 39
2.6.2. Determination of enzyme kinetics 40
2.6.3. Determination of molecular mass 41
2.7. Additional methods 41
2.7.1. Determination of methylglyoxal concentration 41
2.7.2. Determination of polyamine concentration 42
2.7.3. Microscopy analysis 42
2.7.4. EPR analysis 43

III. RESULTS 44
3.1. Free radicals generation by reaction of MG 45
3.2. Gene related with synthesis of polyamine in B. subtilis 46
3.3. Polyamine mutants and growth inhibition 46
3.4. Growth inhibition caused by MG accumulation 53
3.5. Induction of the mgsA gene in polyamine overexpressed mutants 56
3.6. Morphological change by MG accumulation in polyamine overexpressed mutants 58
3.7. MG accumulation modulates of cell division or elongation in polyamine mutants 58
3.8. Characterization of Bacillus MGS 64
3.8.1. Sequence analysis of Bacillus MGS 64
3.8.2 Purification of Bacillus MGS 66
3.8.3. Enzyme activity of Bacillus MGS 68
3.8.4. Biochemical properties of Bacillus MGS 68
3.8.5. Native molecular mass of Bacillus MGS 68
3.9. The functional roles of methylglyoxal synthase in B. subtilis 72
3.9.1. Construct for the deletion of the mgsA gene 72
3.9.2. Construct for the overexpression of the mgsA gene 72
3.9.3. MG production inhibits cell growth and viability 75
3.10. Effect on cell morphology by MG overproduction 81
3.10.1. Cell morphology change by MG overproduction 81
3.10.2. MG overproduction leads to the cell elongation by the activation of MreB 81
IV. DISCUSSION 86
V. REFERENCES 95
국문초록 121
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dc.formatapplication/pdf-
dc.format.extent9325635 bytes-
dc.format.mediumapplication/pdf-
dc.language.isoen-
dc.publisher서울대학교 대학원-
dc.subjectMethylglyoxal-
dc.subjectMethylglyoxal synthase-
dc.subjectPolyamines-
dc.subjectCell elongation-
dc.subjectBacillus subtilis-
dc.subject.ddc570-
dc.titleRelationship between polyamine and methylglyoxalin the cell elongation of Bacillus subtilis-
dc.title.alternativeBacillus subtilis에서 세포 신장에 관여하는 polyamine과 methylglyoxal의 관계-
dc.typeThesis-
dc.description.degreeDoctor-
dc.citation.pagesviii, 123-
dc.contributor.affiliation자연과학대학 생명과학부-
dc.date.awarded2015-08-
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