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The epigenetic modification in embryonic stem cell pluripotency : 후성유전학에 의한 줄기세포 전분화능 조절

DC Field Value Language
dc.contributor.advisor윤홍덕-
dc.contributor.author김태완-
dc.date.accessioned2017-07-14T01:42:07Z-
dc.date.available2017-07-14T01:42:07Z-
dc.date.issued2014-02-
dc.identifier.other000000016822-
dc.identifier.urihttps://hdl.handle.net/10371/122259-
dc.description학위논문 (박사)-- 서울대학교 대학원 : 의과학과, 2014. 2. 윤홍덕.-
dc.description.abstractPluripotent stem cells, including embryonic stem cells (ESCs) and induced pluripotent stem cells (iPSCs) are promising sources for regenerative medicine because of their ability to differentiate into all of the cell types in the body. In particular, iPSCs, which can be derived from patient tissue, have great potential to be used in patient- specific cell therapy. However, the practical application of such cells remains a distant goal due to our limited understanding of molecular mechanisms underlying pluripotency. Epigenetic modifications on chromatin are essential for appropriate cell state transition, such as developmental process, and uncontrolled these modifications give rise to disease. So, it is necessary to study epigenetic modifications in ESC pluripotency for regenerative medicine.
First, we investigated that the role of O-linked-N-acetylglucosamine (O-GlcNAc) in ESC maintenance and differentiation, and in somatic cell reprogramming. Because, O-GlcNAc has emerged as a critical regulator of diverse cellular processes, but its role in ESCs and pluripotency has not been investigated yet. Here we show that O-GlcNAcylation directly regulates core components of the pluripotency network. Blocking O-GlcNAcylation disrupts ESC self-renewal and reprogramming of somatic cells to iPSCs. The core reprogramming factors Oct4 and Sox2 are O-GlcNAcylated in ESCs, but the O-GlcNAc modification is rapidly removed upon differentiation. O-GlcNAc modification of Threonine 228 in Oct4 regulates Oct4 transcriptional activity and is important for inducing many pluripotency related genes, including Klf2, Klf5, Nr5a2, Tbx3 and Tcl1. A T228A point mutation that eliminates this O-GlcNAc modification reduces the capacity of Oct4 to maintain ESC self-renewal and reprogram somatic cells. Overall, our study makes a direct connection between O-GlcNAcylation of key regulatory transcription factors and the activity of the pluripotency network.
Second, we investigated the stable silencing of active ESC genes during differentiation. Pluripotency is governed by a core transcription factor (CTF) network to establish autoregulatory circuitry in ESCs. For proper exit from pluripotency to lineage commitments, CTF circuitry should be extinguished in an orderly manner by epigenetic regulation. Yet, how the stable silencing marker H3K27 trimethylation (H3K27me3) is recruited to active ESC genes during differentiation is poorly understood. Here we show that Ctbp2 is involved in Polycomb repressive complex 2 (PRC2)-mediated silencing of active ESC genes during differentiation. Ablation of Ctbp2 leads to inappropriate gene silencing in ESCs, thereby sustaining ESC maintenance during differentiation. Ctbp2 in ESCs associates with core components of PRC2 and Oct4. Ctbp2 regulates the recruitment of Ezh2 to active ESC genes and stimulates H3K27me3 during differentiation, which is pivotal for lineage commitment.
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dc.description.tableofcontentsAbstract i
Contents iv
List of figures vii

Ⅰ. Introduction 1

Ⅱ. Material and Methods 8
1. Mice 9
2. Cell Culture 9
3. Reprogramming 10
4. Retroviral shRNA-Mediated Knockdown of Ogt 11
5. Lentiviral shRNA-Mediated Knockdown of Ctbp2 11
6. Self-Renewal Assay 12
7. DNA Constructs and Chemicals 12
8. In Vitro Differentiation of ESCs 13
9. Generation of Stable Expression of Either Flag-tagged CTBP2 or EED ESCs 14
10. Generation of Rescued-CTBP2/Ctbp2-knockdown ESCs 14
11. sWGA Purification, Immunoprecipitation, Western blot and Immunofluorescence 15
12. Real-Time qPCR 16
13. Chromatin Immunoprecipitation (ChIP) Assay 16
14. Reporter Gene Assay 20
15. Nano-LC-ESI-MS/MS Analysis of O-GlcNAc Sites in Oct4 20
16. ChIP-sequencing 22
17. Mapping and Identification of Marked Region 22
18. Gel-Filtration Analysis 23
19. Mass Spectrometry Analysis 23
20. Database Search 25

Ⅲ. Results (Part1) 28
O-GlcNAc Regulates Pluripotency and Reprogramming by Directly Acting on Core Components of the Pluripotency Network
1. O-GlcNAc Regulates ESC Self-Renewal and Differentiation, and Somatic Cell Reprogramming 29
2. Core Components of the Pluripotency Network Are Modified by O-GlcNAc in Undifferentiated ESCs 38
3. Mapping O-GlcNAcylation Sites on Oct4 and Sox2 45
4. An O-GlcNAcylation-Defective Mutant of Oct4 and Sox2 Reduces Reprogramming Efficiency and ESC Self-Renewal 55
5. O-GlcNAcylation Regulates Oct4 Transcriptional Activity 62
6. Identification of Genes Regulated by Oct4 O-GlcNAcylation 73

Ⅲ. Results (Part2) 83
Exit from pluripotency by Ctbp2 via silencing of active ESC genes during differentiation
1. Ctbp2, but not Ctbp1, is associated with undifferentiated state and is a downstream target of core transcription factors (CTFs) in ESCs 84
2. Knockdown of Ctbp2 in E14 ESCs did not affect ESC maintenance, but impaired ESC exit from pluripotency during differentiation 90
3. Rescue of Ctbp2 depletion phenotype during ESC differentiation 95
4. Ctbp2 is a component of PRC2 complex 102
5. Ctbp2 regulates PRC2 recruitment, but not Oct4 recruitment 111
6. Oct4 depletion-mediated differentiation is impeded in the absence of Ctbp2 117

Ⅳ. Discussion 123

Ⅴ. References 130

Ⅵ. Abstract in Korean 145
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dc.formatapplication/pdf-
dc.format.extent3747858 bytes-
dc.format.mediumapplication/pdf-
dc.language.isoen-
dc.publisher서울대학교 대학원-
dc.subjectESC-
dc.subjectO-GlcNAcylation-
dc.subjectReprogramming-
dc.subjectCtbp2-
dc.subjectPluripotency-
dc.subjectCore transcription factors-
dc.subjectPRC2-
dc.subjectGene silencing-
dc.subjectiPSC-
dc.subject.ddc610-
dc.titleThe epigenetic modification in embryonic stem cell pluripotency-
dc.title.alternative후성유전학에 의한 줄기세포 전분화능 조절-
dc.typeThesis-
dc.description.degreeDoctor-
dc.citation.pagesviii, 147-
dc.contributor.affiliation의과대학 의과학과-
dc.date.awarded2014-02-
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