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GC MS-Based Metabolomic Approach to Understand the Mucin Utilization of Vibrio vulnificus : GC-MS 기반의 대사체학적 접근을 통한 패혈증 비브리오균의 Mucin 이용에 대한 이해
DC Field | Value | Language |
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dc.contributor.advisor | 최상호 | - |
dc.contributor.author | 장선행 | - |
dc.date.accessioned | 2017-07-14T06:41:36Z | - |
dc.date.available | 2017-07-14T06:41:36Z | - |
dc.date.issued | 2014-02 | - |
dc.identifier.other | 000000018235 | - |
dc.identifier.uri | https://hdl.handle.net/10371/125848 | - |
dc.description | 학위논문 (석사)-- 서울대학교 대학원 : 농생명공학부, 2014. 2. 최상호. | - |
dc.description.abstract | Mucin, a highly glycosylated large glycoprotein, is a major component of mucus layer in the human body and could serve as a source of nutrient to support the growth of enteropathogens. To gain insight into the metabolisms used by human enteropathogen Vibrio vulnificus to utilize mucin, the metabolic profiles of V. vulnificus in the media containing mucin and glucose were compared for in vitro analysis. Also, V. vulnificus infecting to HT29-MTX mucin secreting cell line and medium control were compared for ex vivo analysis. For ex vivo experiment, mucin secreting cell line was constructed and confirmed whether it secretes mucin or not by transmission electron microscopy (TEM), scanning electron microscopy (SEM), and confocal laser scanning microscope (CLSM). The global metabolite profiling was conducted by using gas chromatography-time of flight mass spectrometry (GC-TOF-MS) and in-house programmed database and standards. In the in vitro experiment, principal component analysis revealed clear separations between the intracellular metabolite profiles of V. vulnificus utilizing mucin. When V. vulnificus grown with mucin, both the level of N-Acetyl-D-mannosamine-6-phosphate and N-Acetylglucosamine-6-phosphate a catabolic intermediate of N-acetylneuraminic acid (Neu5Ac) which is a terminal carbohydrate of mucin were increased. The level of amino acids, fatty acids and pyruvate were increased in the mucin utilizing cells both in vitro and ex vivo metabolomics analysis. Taken together, the use of mucin as a nutrient source in V. vulnificus led to the increase abundances of amino acids, fatty acids, sialic acid, and TCA cycle intermediates by activating the catabolic pathways. | - |
dc.description.tableofcontents | I. INTRODUCTION 1
II. MATERIALS AND METHODS 4 Strain and culture condition 4 In vitro bacterial cell culture 4 Cold methanol quenching (in vitro sample preparation) 4 Metabolites extraction 5 Derivatization of metabolites 6 GC-TOF-MS analysis. 6 Data processing 7 Statistical analysis. 7 Construction of HT29-MTX cell line 8 Transmission electron microscopy (TEM) 8 Scanning electron microscopy (SEM) 9 Immunofluroscence staining analysis 10 HT29-MTX cell culture and infection with V. vulnificus 11 Fast filtration (ex vivo sample preparation) 11 III. RESULT 14 Bacterial cell growth profile in the mucin supplemented media 14 Schematic flow of sampling procedures of cold methanol quenching and extraction 16 In vitro, multivariate analysis of metabolites profiles 18 Comparison of metabolites abundances on the mucin 20 Sialic acid metabolism pathway analysis 25 Construction of the mucin-secreting HT29-MTX cells and microscopic assays for confirmations 27 Survival assay of V. vulnificus infecting HT 29-MTX cell line 31 Schematic flow of sampling procedures of fast filtration 33 Ex vivo, multivariate analysis of metabolites profiles 35 Comparison of metabolites abundances on the infecting V. vulnificus 37 Analysis of fatty acid metabolism pathway in V. vulnificus 41 IV. DISCUSSION 43 V. REFERENCES 48 VI. 국문초록 52 | - |
dc.format | application/pdf | - |
dc.format.extent | 1976830 bytes | - |
dc.format.medium | application/pdf | - |
dc.language.iso | en | - |
dc.publisher | 서울대학교 대학원 | - |
dc.subject | Vibrio vulnificus | - |
dc.subject | Mucin | - |
dc.subject | Metabolomics | - |
dc.subject | GC-TOF-MS | - |
dc.subject.ddc | 630 | - |
dc.title | GC MS-Based Metabolomic Approach to Understand the Mucin Utilization of Vibrio vulnificus | - |
dc.title.alternative | GC-MS 기반의 대사체학적 접근을 통한 패혈증 비브리오균의 Mucin 이용에 대한 이해 | - |
dc.type | Thesis | - |
dc.contributor.AlternativeAuthor | Sun Haeng Jang | - |
dc.description.degree | Master | - |
dc.citation.pages | VI, 53 | - |
dc.contributor.affiliation | 농업생명과학대학 농생명공학부 | - |
dc.date.awarded | 2014-02 | - |
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