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Automated Leukocyte Differential Count System Using Dual-Stage Convolutional Neural Network : 이중 합성곱 신경망을 이용한 백혈구 백분율 자동 분석 시스템에 관한 연구

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dc.contributor.advisor김희찬-
dc.contributor.author최진우-
dc.date.accessioned2017-10-27T16:45:39Z-
dc.date.available2017-10-27T16:45:39Z-
dc.date.issued2017-08-
dc.identifier.other000000146329-
dc.identifier.urihttps://hdl.handle.net/10371/136847-
dc.description학위논문 (박사)-- 서울대학교 대학원 공과대학 협동과정 바이오엔지니어링전공, 2017. 8. 김희찬.-
dc.description.abstractLeukocyte or white blood cell differential count is an essential examination modality of hematology laboratory in diagnosis of various blood disorders. However, it requires highly experienced hematologists for correct diagnosis from samples with inter- and intra-sample variations. Due to tedious, time and cost consuming procedure of manual differential count, there has been high demands for development of automated system. In order for it to be applicable in clinical hematology laboratories, an automated system will have to detect and classify leukocytes of different maturation stages, especially in bone marrow aspirate smears. This has been a challenging problem in computer vision, image processing, and machine learning, because of complex nature of bone marrow aspirate smear. The leukocyte has multiple maturation stages, and these maturation stages have small inter-class differences, so it is difficult to differentiate even with expert knowledge. Moreover, a problem of color, shape, and size variations among samples exists and a problem of touching cell due to high leukocyte density of bone marrow aspirate smear exists.
In this dissertation, an automated leukocyte differential count system for bone marrow aspirate smear was developed to overcome problems of manual differential count and to fulfill clinically unmet needs. The system should perform the differential count with high accuracy and objectivity, and high throughput and efficiency. Moreover, it should overcome challenges of bone marrow aspirate smear. To this end, a large dataset of bone marrow smear was collected for development of a detection and a classification algorithms. Watershed transformation and saliency map were utilized for single-leukocyte detection, and the dual-stage convolutional neural network that learns global and local features of complex leukocyte maturation stages was proposed for classification. Lastly, a probability guidance algorithm was proposed for integration of detection and classification algorithms. The performance of proposed system was assessed with ten leukocyte maturation stages of myeloid and erythroid series in bone marrow aspirate smears.
Total of 200 large (1388 × 1040) digital images of bone marrow aspirate smears and 2,323 small (96 × 96) single leukocyte digital images were collected. The proposed system showed a state-of-the-art performance. It achieved an average detection accuracy of 96.09% and an average classification accuracy of 97.06%, and it was able to differential count 100 leukocytes in 4 to 5 seconds. This proposes a new paradigm in diagnosis of blood disorder and showed a potential of deep learning, especially the convolutional neural network, in medical image processing. The proposed system is expected to increase the total number of analyzed leukocytes in a sample, which will provide more statistically reliable information of a patient for diagnosis.
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dc.description.tableofcontentsChapter 1 Introduction 1
1.1. Introduction to Hematology 2
1.2. Introduction to Convolutional Neural Network 12
1.3. Thesis Objectives 16
Chapter 2 Leukocyte Data Collection 19
2.1. Sample Preparation and Acquisition 20
2.2. Dataset Collection and Preparation 23
Chapter 3 Leukocyte Classification 27
3.1. Introduction 28
3.2. Methods 36
3.2.1. Data Collection and Preparation 36
3.2.2. Data Oversampling and Augmentation 38
3.2.3. Convolutional Neural Network Architecture and Dual-stage Convolutional Neural Network 40
3.2.4. Convolutional Neural Network Training 43
3.2.5. Implementation 46
3.2.6. Evaluation Metrics 46
3.3. Results and Discussion 48
3.4. Conclusion 66
Chapter 4 Implementation of Automated Leukocyte Differential Count System 67
4.1. System Overview 68
4.2. Leukocyte Detection 70
4.2.1. Introduction 70
4.2.2. Detection Algorithm 75
4.2.3. Experimental Setup and Evaluation 81
4.2.4. Results and Discussion 82
4.3. Automated Leukocyte Differential Count System 92
4.3.1. Implementation of Detection and Classification Algorithms 92
4.3.2. Graphical User Interface Design 93
4.3.3. Probability Guidance Algorithm 95
4.3.4. Experimental Setup and Evaluation 97
4.3.5. Results and Discussion 98
4.4. Conclusion 102
Chapter 5 Thesis Summary and Future Work 104
5.1 Thesis Summary and Contributions 105
5.2 Future Work 109
Bibliography 115
Abstract in Korean 122
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dc.formatapplication/pdf-
dc.format.extent3435529 bytes-
dc.format.mediumapplication/pdf-
dc.language.isoen-
dc.publisher서울대학교 대학원-
dc.subjectLeukocyte differential count-
dc.subjectConvolutional neural network-
dc.subjectBone marrow aspirate smear-
dc.subjectAutomated differential count system-
dc.subjectComputer-aided diagnosis-
dc.subject.ddc660.6-
dc.titleAutomated Leukocyte Differential Count System Using Dual-Stage Convolutional Neural Network-
dc.title.alternative이중 합성곱 신경망을 이용한 백혈구 백분율 자동 분석 시스템에 관한 연구-
dc.typeThesis-
dc.contributor.AlternativeAuthorJin Woo Choi-
dc.description.degreeDoctor-
dc.contributor.affiliation공과대학 협동과정 바이오엔지니어링전공-
dc.date.awarded2017-08-
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