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Systematic Study of Calaphidinae s.l. (Hemiptera: Aphididae) in the Korean Peninsula: Cryptic Diversity Identification and Phylogenetic Reconstruction : 한반도산 참알락진딧물아과(노린재목: 진딧물과)의 계통분류학적 연수
| DC Field | Value | Language |
|---|---|---|
| dc.contributor.advisor | 이승환 | - |
| dc.contributor.author | 이예림 | - |
| dc.date.accessioned | 2017-10-27T16:50:45Z | - |
| dc.date.available | 2017-10-27T16:50:45Z | - |
| dc.date.issued | 2017-08 | - |
| dc.identifier.other | 000000145432 | - |
| dc.identifier.uri | https://hdl.handle.net/10371/136903 | - |
| dc.description | 학위논문 (박사)-- 서울대학교 대학원 농업생명과학대학 농생명공학부, 2017. 8. 이승환. | - |
| dc.description.abstract | The subfamily Calaphidinae s.l. were investigated on three subjects: i) taxonomic review of the Korean Calaphidinae including two closely related subfamilies (Phyllaphidinae and Saltusaphidinae), ii) identifying cryptic diversity of the subfamily Calaphidinae s.s. based on DNA barcoding and iii) molecular phylogeny and evolutionary hypothesis of the subfamily Calaphidinae s.l. In the first part, Calaphidinae and two closely related subfamilies (Phyllaphidinae and Saltusaphidinae) were reviewed in the Korean peninsula, comprising 89 species of 33 genera. In this study, 16 new species and 18 unrecorded species were newly recognized. In addition, 1 revived species, 4 misidentified, and 2 synonymized species were confirmed. In the second part, cryptic diversity in the subfamily Calaphidinae s.s. were
I investigated based on 899 cytochrome c oxidase I (COI) sequences from 115 morphospecies. A total of 15 cryptic species was identified from 12 morphospecies as well as 3 morphologically distinct species pairs that shared DNA barcoding. The third part was testing a monophyly of the subfamily Calaphidinae s.l. including sister group relationship and confirming the relationship among its components such as tribe and genera with reference to an evolutionary hypothesis of ancestral host plant relationship and host shift. The phylogenetic results demonstrated that Phyllaphidinae forms a basal node as the most primitive group of Calaphidinae s.l. and Calaphidinae s.l. is not a monophyly by including Saltusaphidinae. | - |
| dc.description.tableofcontents | PART I. Taxonomic review of Calaphidinae s.l. (Hemiptera: Aphididae) in the Korean peninsula 1
Abstract 1 1.1. Introduction 2 1.1.1. General introduction 2 1.1.2. Historical review 4 1.1.3. Historical review of Calaphidinae s.l. in the Korean peninsula 9 1.2. Materials and Methods 22 1.2.1. Taxon sampling 22 1.2.2. Specimen preparation and examination 22 1.2.3. Glossary: Terms used in aphid morphology 23 1.3. Systematic accounts 30 1.3.1. Subfamily Calaphidinae Oestlund,1919 30 Tribe Calaphidini Oestlund, 1919 33 Subtribe Calaphidina Oestlund, 1919 33 Genus Betacallis Matsumura, 1919 34 Genus Betulaphis Glendenning, 1926 39 Genus Boernerina Bramstedt, 1940 42 Genus Calaphis Walsh, 1863 45 Genus Callipterinella van der Goot, 1913 51 Genus Clethrobius Mordvilko, 1928 57 Genus Euceraphis Walker, 1870 62 Genus Neobetulaphis Basu, 1964 72 Genus Symydobius Mordvilko, 1894 75 Subgenus Symydobius Mordvilko, 1894 75 Subgenus Yezocallis Matsumura, 1917 78 Subtribe Monaphidina Baker, 1920 82 Genus Monaphis Walker, 1870 82 Tribe Panaphidini Oestlund, 1923 85 Subtribe Myzocallidina Passerini, 1860 85 Genus Tuberculatus Mordvilko, 1894 85 Subgenus Acanthocallis Matsumura, 1917 87 Subgenus Acanthotuberculatus Quednau, 1999 95 Subgenus Arakawana Matsumura, 1917 103 Subgenus Nippocallis Matsumura, 1917 110 Subgenus Orientuberculoides Hille Ris Lambers, 1974 115 Subtribe Panaphidina Oestlund, 1923 143 Genus Chromaphis Hille Ris Lambers, 1974 145 Genus Chromocallis Takahashi, 1961 148 Genus Dasyaphis Takahashi, 1938 150 Genus Mesocallis Matsumura, 1919 152 Subgenus Mesocallis Matsumura, 1919 153 Subgenus Paratinocallis Higuchi, 1972 160 Genus Monelliopsis Richards, 1965 165 Genus Neochromaphis Takahashi, 1921 167 Genus Panaphis Kirkaldy, 1904 172 Genus Pseudochromaphis Zhang, 1982 175 Genus Pterocallis Passerini, 1860 178 Subgenus Pterocallis Passerini, 1860 179 Subgenus Recticallis Matsumura, 1919 181 Genus Sarucallis Shinji, 1922 187 Genus Shivaphis Das, 1918 190 Subgenus Shivaphis Das, 1918 . 191 Subgenus Sinishivaphis Zhang, 1982 199 Genus Takecallis Matsumura, 1917 204 Genus Therioaphis Walker, 1870 216 Subgenus Pterocallidium Börner, 1949 217 Genus Tiliaphis Takahashi, 1961 223 Genus Tinocallis Matsumura, 1919 233 Subgenus Sappocallis Matsumura, 1919 233 Subgenus Tinocallis Matsumura, 1919 241 1.3.2. Subfamily Phyllaphidinae Herrich-Schaeffer, 1857 253 Genus Diphyllaphis Takahashi, 1960 255 Genus Machilaphis Takahashi, 1960 260 Genus Phyllaphis Koch, 1856 262 1.3.3. Subfamily Saltusaphidinae Baker, 1920 264 Tribe Saltusaphidini Baker, 1920 267 Genus Saltusaphis Theobald, 1915 267 Tribe Thripsaphidini Gillette, 1917 269 Genus Allaphis Mordvilko, 1921 269 Genus Subsaltusaphis Quednau, 1952 273 Genus Thripsaphis Gillette, 1917 275 PART II. DNA barcoding on Calaphidinae s.s. (Hemiptera: Aphididae): cryptic diversity identification 279 Abstract 279 2.1. Introduction 281 2.2. Materials and Methods 284 2.2.1. Taxon sampling and vouchering 284 2.2.2. Species identification 284 2.2.3. DNA extraction and barcoding . 284 2.2.4. Molecular analyses 285 2.3. Results 288 2.3.1. Genetic variation 288 2.3.2. MOTU estimation 289 2.3.3. Neighbor joining analysis: case of species delimitation 289 2.4. Discussion 302 PART III. Phylogenetic reconstruction and evolutionary hypothesis of the subfamily Calaphidinae s.l. (Hemiptera: Aphididae) 329 Abstract 329 3.1. Introduction 330 3.2. Materials and Methods 335 3.2.1. Taxon sampling 335 3.2.2. Specimen vouchering, DNA extraction, PCR amplification and sequencing 335 3.2.3. Sequence alignment and modeltest 337 3.2.4. Phylogenetic analyses 337 3.2.5. Ancestral host plant reconstruction 338 3.2.6. Molecular dating 339 3.3. Results 352 3.3.1. Tree topology of combined dataset 352 3.3.2. Phylogenetic results 352 3.3.3. Ancestral host plant reconstruction 354 3.3.4. Molecular dating 355 3.4. Discussion 361 Literature cited 368 Appendix I. Figure plates 383 Appendix II. Morphometric data 430 국문 초록 475 감사의 글 477 | - |
| dc.format | application/pdf | - |
| dc.format.extent | 47838655 bytes | - |
| dc.format.medium | application/pdf | - |
| dc.language.iso | en | - |
| dc.publisher | 서울대학교 대학원 | - |
| dc.subject | aphids | - |
| dc.subject | cryptic species | - |
| dc.subject | new species | - |
| dc.subject | Phyllaphidinae | - |
| dc.subject | phylogeny | - |
| dc.subject | Saltusaphidinae | - |
| dc.subject.ddc | 630 | - |
| dc.title | Systematic Study of Calaphidinae s.l. (Hemiptera: Aphididae) in the Korean Peninsula: Cryptic Diversity Identification and Phylogenetic Reconstruction | - |
| dc.title.alternative | 한반도산 참알락진딧물아과(노린재목: 진딧물과)의 계통분류학적 연수 | - |
| dc.type | Thesis | - |
| dc.description.degree | Doctor | - |
| dc.contributor.affiliation | 농업생명과학대학 농생명공학부 | - |
| dc.date.awarded | 2017-08 | - |
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