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New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication
DC Field | Value | Language |
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dc.contributor.author | Kim, Seungill | - |
dc.contributor.author | Park, Jieun | - |
dc.contributor.author | Yeom, Seon-In | - |
dc.contributor.author | Kim, Yong-Min | - |
dc.contributor.author | Seo, Eunyoung | - |
dc.contributor.author | Kim, Ki-Tae | - |
dc.contributor.author | Kim, Myung-Shin | - |
dc.contributor.author | Lee, Je Min | - |
dc.contributor.author | Cheong, Kyeongchae | - |
dc.contributor.author | Shin, Ho-Sub | - |
dc.contributor.author | Kim, Saet-Byul | - |
dc.contributor.author | Han, Koeun | - |
dc.contributor.author | Lee, Jundae | - |
dc.contributor.author | Park, Minkyu | - |
dc.contributor.author | Lee, Hyun-Ah | - |
dc.contributor.author | Lee, Hye-Young | - |
dc.contributor.author | Lee, Youngsill | - |
dc.contributor.author | Oh, Soohyun | - |
dc.contributor.author | Lee, Joo Hyun | - |
dc.contributor.author | Choi, Eunhye | - |
dc.contributor.author | Choi, Eunbi | - |
dc.contributor.author | Lee, So Eui | - |
dc.contributor.author | Jeon, Jongbum | - |
dc.contributor.author | Kim, Hyunbin | - |
dc.contributor.author | Choi, Gobong | - |
dc.contributor.author | Song, Hyeunjeong | - |
dc.contributor.author | Lee, JunKi | - |
dc.contributor.author | Lee, Sang-Choon | - |
dc.contributor.author | Kwon, Jin-Kyung | - |
dc.contributor.author | Lee, Hea-Young | - |
dc.contributor.author | Koo, Namjin | - |
dc.contributor.author | Hong, Yunji | - |
dc.contributor.author | Kim, Ryan W. | - |
dc.contributor.author | Kang, Won-Hee | - |
dc.contributor.author | Huh, Jin Hoe | - |
dc.contributor.author | Kang, Byoung-Cheorl | - |
dc.contributor.author | Yang, Tae-Jin | - |
dc.contributor.author | Lee, Yong-Hwan | - |
dc.contributor.author | Bennetzen, Jeffrey L. | - |
dc.contributor.author | Choi, Doil | - |
dc.date.accessioned | 2017-11-06T00:27:48Z | - |
dc.date.available | 2017-11-06T09:28:39Z | - |
dc.date.issued | 2017-11-01 | - |
dc.identifier.citation | Genome Biology, 18(1):210 | ko_KR |
dc.identifier.issn | 1474-760X | - |
dc.identifier.uri | https://hdl.handle.net/10371/138337 | - |
dc.description.abstract | Abstract
Background Transposable elements are major evolutionary forces which can cause new genome structure and species diversification. The role of transposable elements in the expansion of nucleotide-binding and leucine-rich-repeat proteins (NLRs), the major disease-resistance gene families, has been unexplored in plants. Results We report two high-quality de novo genomes (Capsicum baccatum and C. chinense) and an improved reference genome (C. annuum) for peppers. Dynamic genome rearrangements involving translocations among chromosomes 3, 5, and 9 were detected in comparison between C. baccatum and the two other peppers. The amplification of athila LTR-retrotransposons, members of the gypsy superfamily, led to genome expansion in C. baccatum. In-depth genome-wide comparison of genes and repeats unveiled that the copy numbers of NLRs were greatly increased by LTR-retrotransposon-mediated retroduplication. Moreover, retroduplicated NLRs are abundant across the angiosperms and, in most cases, are lineage-specific. Conclusions Our study reveals that retroduplication has played key roles for the massive emergence of NLR genes including functional disease-resistance genes in pepper plants. | ko_KR |
dc.description.sponsorship | This work was supported by a grant from the Agricultural Genome Center of the Next Generation Biogreen 21 Program of RDA (Project No. PJ01127501) and by a grant from the Ministry of Science, ICT, and Future Planning (MSIP) of the Korean government through the National Research Foundation (NRF-2015R1A2A1A01002327) to DC. | ko_KR |
dc.language.iso | en | ko_KR |
dc.publisher | BioMed Central | ko_KR |
dc.subject | NLR | ko_KR |
dc.subject | Retroduplication | ko_KR |
dc.subject | LTR-retrotransposon | ko_KR |
dc.subject | Disease-resistance gene | ko_KR |
dc.subject | Genome evolution | ko_KR |
dc.title | New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication | ko_KR |
dc.type | Article | ko_KR |
dc.contributor.AlternativeAuthor | 김승일 | - |
dc.contributor.AlternativeAuthor | 박지은 | - |
dc.contributor.AlternativeAuthor | 염선인 | - |
dc.contributor.AlternativeAuthor | 김용민 | - |
dc.contributor.AlternativeAuthor | 서은영 | - |
dc.contributor.AlternativeAuthor | 김기태 | - |
dc.contributor.AlternativeAuthor | 김명신 | - |
dc.contributor.AlternativeAuthor | 이제민 | - |
dc.contributor.AlternativeAuthor | 정경채 | - |
dc.contributor.AlternativeAuthor | 신호섭 | - |
dc.contributor.AlternativeAuthor | 김샛별 | - |
dc.contributor.AlternativeAuthor | 한고은 | - |
dc.contributor.AlternativeAuthor | 이준대 | - |
dc.contributor.AlternativeAuthor | 박민규 | - |
dc.contributor.AlternativeAuthor | 이현아 | - |
dc.contributor.AlternativeAuthor | 이혜영 | - |
dc.contributor.AlternativeAuthor | 이영실 | - |
dc.contributor.AlternativeAuthor | 오수현 | - |
dc.contributor.AlternativeAuthor | 이주현 | - |
dc.contributor.AlternativeAuthor | 최은혜 | - |
dc.contributor.AlternativeAuthor | 최은비 | - |
dc.contributor.AlternativeAuthor | 이소의 | - |
dc.contributor.AlternativeAuthor | 전종범 | - |
dc.contributor.AlternativeAuthor | 김현빈 | - |
dc.contributor.AlternativeAuthor | 최고봉 | - |
dc.contributor.AlternativeAuthor | 송현정 | - |
dc.contributor.AlternativeAuthor | 이준기 | - |
dc.contributor.AlternativeAuthor | 이상춘 | - |
dc.contributor.AlternativeAuthor | 권진경 | - |
dc.contributor.AlternativeAuthor | 이해영 | - |
dc.contributor.AlternativeAuthor | 구남진 | - |
dc.contributor.AlternativeAuthor | 홍윤지 | - |
dc.contributor.AlternativeAuthor | 강원희 | - |
dc.contributor.AlternativeAuthor | 허진호 | - |
dc.contributor.AlternativeAuthor | 강병철 | - |
dc.contributor.AlternativeAuthor | 양태진 | - |
dc.contributor.AlternativeAuthor | 이용환 | - |
dc.contributor.AlternativeAuthor | 최도일 | - |
dc.identifier.doi | 10.1186/s13059-017-1341-9 | - |
dc.language.rfc3066 | en | - |
dc.rights.holder | The Author(s). | - |
dc.date.updated | 2017-11-05T04:30:05Z | - |
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