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The ICE transcription factors integrate environmental signals into developmental pathways in Arabidopsis : ICE 전사인자에 의한 환경 신호 및 식물 발달관련 경로의 통합에 관한 연구

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dc.contributor.advisor박충모-
dc.contributor.author이재형-
dc.date.accessioned2018-05-28T17:16:33Z-
dc.date.available2018-05-28T17:16:33Z-
dc.date.issued2018-02-
dc.identifier.other000000149422-
dc.identifier.urihttps://hdl.handle.net/10371/141183-
dc.description학위논문 (박사)-- 서울대학교 대학원 : 자연과학대학 화학부, 2018. 2. 박충모.-
dc.description.abstractPlants are sessile organisms that must respond to changes in their environments. They should be able to tolerate environmental constraints to survive and propagate. To cope with inadequate environmental conditions, plants have evolved adaptive mechanisms through the gene regulatory network. Many transcriptional regulators including transcription factors directly or indirectly control their downstream gene expressions in response to environmental changes. INDUCER OF CBF EXPRESSION (ICE) transcription factors have a crucial role in transcriptional regulation of their target gene expressions in response to environmental stimuli. However, it is largely unknown how environmental signals are integrated into plant developmental pathways in Arabidopsis.
In this study, I investigated function of ICE transcription factors as a molecular knob that integrate environmental signals into plant development. The regulatory mechanisms of the transcription factors, which are critical for temperature and light reponses, were identified.
In Chapter 1, I examined how the temperature and photoperiod signals are coordinated to modulate timing of flowering during changing seasons. In this study, I demonstrated an elaborate signaling network for fine-tuning of seasonal flowering in plants. I found that the transient-cold effect on flowering is mediated primarily by ICE1. ICE1 directly activates FLOWERING LOCUS C (FLC) under short-term cold conditions. By contrast, under floral promotive conditions, SUPPRESSOR OF OVEREXPRESSION OF CO 1 (SOC1), which is largely known as a floral inducer, inhibited the DNA binding of ICE1 to the FLC and C-REPEAT BINDING FACTOR 3 gene promoters, inducing flowering with a reduction of freezing tolerance. These observations indicate that optimal flowering of plants during changing seasons is fine-tuned by an ICE1-FLC-SOC1 signaling network.
In Chapter 2, I investigated how light induces stomatal development. In this study, I found that CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1) degrades and ubiquitinates ICE proteins under dark conditions. Moreover, light inhibited COP1-mediated degradation of ICE proteins in the abaxial epidermal cells, thus inducing stomatal development. These observations indicate that photostabilization of ICE proteins, via light-mediated inhibition of COP1-mediated protein surveillance systems, is important for stomatal development.
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dc.description.tableofcontentsBACKGROUND 1
1. Temperature-mediated adaptive responses in plants 1
1.1 Role of ICE1 in acquiring cold acclimation. 1
1.2 Short-term exposure to cold temperature delays flowering in Arabidopsis. 2
1.3 The broader role of ICE1 in plant development 3
2. Light-mediated stomatal development in Arabidopsis 6
2.1 Stomatal differentiation and patterning in Arabidopsis 6
2.2 Light is required for inducing stomatal development. 7
2.3 COP1 is a photomorphogenic repressor. 9
3. The purpose of this study 10
MATERIALS AND METHODS
1. Plant materials and growth conditions 11
2. Gene expression analysis 13
3. Transcriptional regulation activity assay 14
4. ICE1 protein stability assay 15
5. ChIP assay 16
6. Yeast two-hybrid assay 16
7. BiFC assay 17
8. in vitro pull-down assay 17
9. Coimmunoprecipitation assay 18
10. Freezing tolerance assay 19
11. Flowering time measurement 19
12. Intermittent cold treatment and vernalization 19
13. Fluorescent imaging and microscopic analysis 20
14. Ubiquitination assay 20
15. SI measurement 20
16. Statistical analysis 20
CHAPTER 1. 24
ABSTRACT 25
INTRODUCTION 26
RESULTS 29
FLC expression is reduced in the early-flowering ice1- 2 mutant. 29
ICE1 activates FLC by binding to the gene promoter. 33
ICE1 activates the FLC gene under cold temperature conditions. 40
ICE1 interacts with SOC1 in the nucleus. 42
SOC1 inhibits ICE1 binding to FLC promoter in promoting flowering. 46
SOC1 inhibits ICE1 binding to CBF3 promoter in inducing cold acclimation. 52
DISCUSSION 60
CHAPTER 2. 65
ABSTRACT 66
INTRODUCTION 67
RESULTS 71
Light induces ICE accumulation in the nuclei of leaf abaxial epidermal cells. 71
COP1 interacts with ICE proteins. 74
COP1 ubiquitinates ICE proteins. 81
COP1 degrades ICE proteins through ubiquitin/proteasome pathway 85
Light inhibits COP1-mediated degradation of ICE proteins 98
Light-mediated stabilization of ICE proteins is critical for stomatal development. 100
ICE proteins integrate light and developmental signals into stomatal development. 110
DISCUSSION 116
REFERENCES 121
PUBLICATION LIST 138
ABSTRACT IN KOREAN 139
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dc.formatapplication/pdf-
dc.format.extent2665082 bytes-
dc.format.mediumapplication/pdf-
dc.language.isoen-
dc.publisher서울대학교 대학원-
dc.subjectadaptive responses-
dc.subjectTranscription factors-
dc.subjectflowering-
dc.subjectlow temperature-
dc.subjectlight signaling-
dc.subjectstomatal development-
dc.subject.ddc540-
dc.titleThe ICE transcription factors integrate environmental signals into developmental pathways in Arabidopsis-
dc.title.alternativeICE 전사인자에 의한 환경 신호 및 식물 발달관련 경로의 통합에 관한 연구-
dc.typeThesis-
dc.description.degreeDoctor-
dc.contributor.affiliation자연과학대학 화학부-
dc.date.awarded2018-02-
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