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Interrelationship between tetracycline resistance determinants, phylogenetic group affiliation and carriage of class 1 integrons in commensal Escherichia coli isolates from cattle farms

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dc.contributor.authorBelaynehe, Kuastros Mekonnen-
dc.contributor.authorShin, Seung Won-
dc.contributor.authorYoo, Han Sang-
dc.date.accessioned2019-03-11T04:19:06Z-
dc.date.available2019-03-11T13:20:11Z-
dc.date.issued2018-11-12-
dc.identifier.citationBMC Veterinary Research, 14(1):340ko_KR
dc.identifier.issn1746-6148-
dc.identifier.urihttps://hdl.handle.net/10371/146928-
dc.description.abstractBackground
Carriage of antibiotic-resistant foodborne pathogens by food production animals is one of many contributors to treatment failure in health care settings, and it necessitates an integrated approach to investigate the carriage of resistant pathogens harboring integrons in food-producing animals.

Methods
Escherichia coli isolates with reduced susceptibility to tetracycline antibiotics (n = 92) were tested for associations between carriage of class1 integrons, phylogenetic group affiliation and tetracycline resistance determinants using the MIC method, PFGE analysis, PCR and sequencing.

Results
Phylogroups B1 and A were the most common (58.7 and 19.6%, respectively), followed by groups D (20.7%) and B2 (1.1%). All isolates carried at least one of the tet genes examined. In addition, 88 (95.7%) of all tetracycline-resistant isolates carried tet(A) or tet(B), while 47 (51.1%) and 41 (44.6%) harbored only tet(A) or tet(B), respectively. Likewise, isolates harboring these genes had a higher chance (P < 0.05) of carrying class 1 integrons. Of the tested isolates, 38 (41.3%) carried the intI1 gene. Classical integrons with complete genes (sul1 and qacE∆1) at the 3′-CS were recognized in 27 isolates. PCR screening and subsequent sequencing demonstrated that 84.2% (32/38) of the intI1-positive isolates harbored resistance gene cassettes. Overall, seven gene cassettes were identified, either solely or combined with another gene cassette. The most common gene was aadA1 (10 isolates), followed by a combination of aadA1-dfrA1 (seven isolates), aadA1-dfrA12 (six isolates) and aadA1-aadA2-dfrA12 (three isolates). Genetic typing using PFGE showed minimum clonal relatedness with 28 different clusters and 12–25 discernible DNA fragments.

Conclusions
This study brings new insight into the relationships between the presence of integrons, phylogenetic group association and characteristics of tetracycline antibiotic resistance determinants in commensal E. coli strains.
ko_KR
dc.description.sponsorshipThis study was supported by the Cooperative research program for agriculture science and technology development (project No. PJ00897001), Rural Development Administration and Research Institute of Veterinary Science and BK21 PLUS program, Seoul National University, Republic of Koreako_KR
dc.language.isoenko_KR
dc.publisherBioMed Centralko_KR
dc.subjectE. coliko_KR
dc.subjectClass 1 integronsko_KR
dc.subjectTetracycline resistanceko_KR
dc.subjectPhylogenetic groupko_KR
dc.subjectPFGEko_KR
dc.titleInterrelationship between tetracycline resistance determinants, phylogenetic group affiliation and carriage of class 1 integrons in commensal Escherichia coli isolates from cattle farmsko_KR
dc.typeArticleko_KR
dc.contributor.AlternativeAuthor신승원-
dc.contributor.AlternativeAuthor유한상-
dc.identifier.doi10.1186/s12917-018-1661-3-
dc.language.rfc3066en-
dc.rights.holderThe Author(s).-
dc.date.updated2018-11-18T04:27:33Z-
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College of Veterinary Medicine (수의과대학)Dept. of Veterinary Medicine (수의학과)Journal Papers (저널논문_수의학과)
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