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Development of Multiplexed Immuno-N-Terminomics to Reveal the Landscape of Proteolytic Processing in Early Embryogenesis of Drosophila melanogaster

Cited 1 time in Web of Science Cited 2 time in Scopus
Authors
Shin, Sanghee; Hong, Ji Hye; Na, Yongwoo; Lee, Mihye; Qian, Wei-Jun; Kim, V. Narry; Kim, Jong-Seo
Issue Date
2020-04
Citation
Analytical Chemistry, Vol.92 No.7, pp.4926-4934
Abstract
Protein expression levels are regulated through both translation and degradation mechanisms. Levels of degradation intermediates, that is, partially degraded proteins, cannot be distinguished from those of intact proteins by global proteomics analysis, which quantify total protein abundance levels. This study aimed to develop a tool for assessing the aspects of degradation regulation via proteolytic processing through a new multiplexed N-terminomics method involving selective isobaric labeling of protein N-termini and immunoaffinity capture of the labeled N-terminal peptides. Our method allows for not only identification of proteolytic cleavage sites, but also highly multiplexed quantification of proteolytic processing. We profiled a number of potential cleavage sites by signal peptidase and provided experimental confirmation of predicted cleavage sites of signal peptide. Furthermore, the present method uniquely represents the landscape of proteomic proteolytic processing rate during early embryogenesis in Drosophila melanogaster, revealing the underlying mechanism of stringent decay regulation of zygotically expressed proteins during early stages of embryogenesis.
ISSN
0003-2700
URI
https://hdl.handle.net/10371/171864
DOI
https://doi.org/10.1021/acs.analchem.9b05035
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College of Natural Sciences (자연과학대학)Dept. of Biological Sciences (생명과학부)Journal Papers (저널논문_생명과학부)
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