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A genome-wide association study of copy-number variation identifies putative loci associated with osteoarthritis in Koreans

Cited 5 time in Web of Science Cited 6 time in Scopus
Authors
Moon, Sanghoon; Keam, Bhumsuk; Hwang, Mi Yeong; Lee, Young; Park, Suyeon; Oh, Ji Hee; Kim, Yeon-Jung; Lee, Heun-Sik; Kim, Nam Hee; Kim, Young Jin; Kim, Dong-Hyun; Han, Bok-Ghee; Kim, Bong-Jo; Lee, Juyoung
Issue Date
2015-04-04
Publisher
BioMed Central
Citation
BMC Musculoskeletal Disorders, 16(1):76
Keywords
OsteoarthritisCopy number variationOA risk geneTNKSCA10
Description
This is an Open Access article distributed under the terms of the Creative
Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and
reproduction in any medium, provided the original work is properly credited.
Abstract
Background
OA is a complex disease caused by environmental and genetic risk factors. The purpose of this study is to identify candidate copy number variations (CNVs) associated with OA.

Methods
We performed a genome-wide association study of CNV to identify potential loci that confer susceptibility to or protection from OA. CNV genotyping was conducted using NimbleGen HD2 3 × 720K comparative hybridization array and included samples from 371 OA patients and 467 healthy controls. The putative CNV regions identified were confirmed with a TaqMan assay.

Results
We identified six genomic regions associated with OA encompassing CNV loci. None of six loci had previously been reported in genome-wide association studies with OA, although a genetic analysis suggested that they have functional effects. The protein product of a candidate risk gene for obesity, TNKS, targets Wnt inhibition, and this gene was significantly associated with hand and knee OA. Copy number deletion on TNKS was associated with a 1.37-fold decreased risk for OA. In addition, CA10, which shows a strong association with osteoporosis, was also significant in our study. Copy number deletion on this gene was associated with a 1.69-fold decreased risk for OA.

Conclusion
We identified several CNV loci that may contribute to OA susceptibility in Koreans. Further functional investigations of these genes are warranted to fully characterize their putative association.
Language
English
URI
http://hdl.handle.net/10371/100637
DOI
https://doi.org/10.1186/s12891-015-0531-4
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College of Medicine/School of Medicine (의과대학/대학원)Internal Medicine (내과학전공)Journal Papers (저널논문_내과학전공)
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