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Identification of porcine Toll-like receptor2 (TLR2) targeting peptide ligands using cell-based phage display combined with Illumina sequencing : 일루미나 시퀀싱과 세포 기반 파지 디스플레이를 통한 돼지 TLR2 표적 펩타이드의 동정

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dc.contributor.advisor최윤재-
dc.contributor.author안수빈-
dc.date.accessioned2017-07-14T06:48:27Z-
dc.date.available2020-04-01T02:21:32Z-
dc.date.issued2017-02-
dc.identifier.other000000141062-
dc.identifier.urihttps://hdl.handle.net/10371/125987-
dc.description학위논문 (석사)-- 서울대학교 대학원 : 농생명공학부, 2017. 2. 최윤재.-
dc.description.abstractToll-like receptors (TLRs) are the representative PRRs and
play an important role in innate and adaptive immunity. Among various types of TLRs, TLR2 could recognize a wide range of bacterial and fungal components and induce innate and adaptive immune responses. In particular, it is known that TLR2-targeting formulations in vaccines showed adjuvants properties and could effectively induce humoral and cellular immune responses.
In this study, porcine TLR2-targeting peptide ligands were identified using cell-based phage display combined with high-throughput sequencing. Porcine TLR2-overexpressing cell line was constructed using lentiviral vector and established cell line was confirmed through flow cytometry, western blot and ligand binding assay. Cell-based phage display was performed on the constructed cell line and two types of biopanning were proceeded : subtractive and non-subtractive biopanning. After 3 rounds of biopanning, eluted phage from each round was sequenced using Illumina platform and three candidate peptides were identified: NAGHLSQ, VPSKPGL, RANLDGQ.
In the binding assay, NAGHLSQ showed the highest binding affinity to the constructed cell line and binding of NAGHLSQ to TLR2 overexpessing cell line was gradually decreased in response to increasing concentration of TLR2 ligand. Thus, NAGHLSQ peptide could be used in porcine vaccines as TLR 2 targeting formulation.
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dc.description.tableofcontentsI. Introduction 1
Ⅱ. Review of Literature 3
1. Toll-like receptors (TLRs) and their signalling 3
1) Types of TLRs and their ligands 3
2) TLR signalling 3
2. Targeting TLR2 for vaccine development 6
1) TLR2 ligands and TLR2 signalling 6
2) TLR2 expression on specific cells and tissues 8
3) Immunomodulation by TLR2-targeting formulations 11
(1) Antigen 11
(2) Lymphocyte activity 12
(3) Mucosal immune responses 14
3. Phage display 19
1) General information about phage display 19
2) Types of phage library 21
(1) Peptide library 21
(2) Antibody library 22
3) Types of screening 23
(1) in vitro screening 23
(2) in vivo screening 24
Ⅲ. Materials and Methods 25
1. Cell culture 25
2. Construction of porcine TLR2-overexpressing cell line 26
1) Confirmation of VSVG envelope tropism on IPEC-J2 cells 26
2) Plasmid construction 26
3) Preparation of porcine TLR2-expressing lentiviruses 27
4) Lentiviral transduction on IPEC-J2 cells 27
3. Validation of constructed cell line 29
1) Flow cytometric analysis 29
2) Western blot 29
3) Ligand binding assay 30
4. Cell-based phage display 31
1) Phage display peptide library 31
2) Biopanning in vitro 31
(1) in vitro phage binding assay 31
(2) Phage titration 34
(3) Phage amplification 34
5. Illumina sequencing 36
1) Isolation of phage DNA 36
2) Preparation of sequencing templates 36
(1) PCR amplification of phage DNA 37
(2) Construction of sequencing library 37
3) Processing of sequencing data 38
6. Characterization of porcine TLR2 targeting peptides 39
1) Peptide binding assay 39
2) Competition assay 39
7. Statistical analysis 40
Ⅳ. Results and Discussion 41
1. Construction of porcine TLR2-overexpressing cell line 41
2. Validation of constructed cell line 43
3. Cell-based phage display 46
4. Illumina sequencing 48
1) Characterization of naive library 48
2) Characterization of enrichment process 49
3) Identification of false positives 53
5. Characterization of porcine TLR2 targeting peptide 55
1) Peptide binding assay 55
2) Competition assay 57
Ⅴ. Conclusion and Further Aspects 59
Ⅵ. Literature Cited 61
Ⅶ. Summary in Korean 78
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dc.formatapplication/pdf-
dc.format.extent1424169 bytes-
dc.format.mediumapplication/pdf-
dc.language.isoen-
dc.publisher서울대학교 대학원-
dc.subjectTLR-
dc.subjectLentivirus-
dc.subjectCell-based phage display-
dc.subjectIllumina sequencing-
dc.subject.ddc630-
dc.titleIdentification of porcine Toll-like receptor2 (TLR2) targeting peptide ligands using cell-based phage display combined with Illumina sequencing-
dc.title.alternative일루미나 시퀀싱과 세포 기반 파지 디스플레이를 통한 돼지 TLR2 표적 펩타이드의 동정-
dc.typeThesis-
dc.description.degreeMaster-
dc.citation.pages80-
dc.contributor.affiliation농업생명과학대학 농생명공학부-
dc.date.awarded2017-02-
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