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FUSARIUM-ID v.3.0: An Updated, Downloadable Resource for Fusarium Species Identification
DC Field | Value | Language |
---|---|---|
dc.contributor.author | Torres-Cruz, Terry J. | - |
dc.contributor.author | Whitaker, Briana K. | - |
dc.contributor.author | Proctor, Robert H. | - |
dc.contributor.author | Broders, Kirk | - |
dc.contributor.author | Laraba, Imane | - |
dc.contributor.author | Kim, Hye-Seon | - |
dc.contributor.author | Brown, Daren W. | - |
dc.contributor.author | O'Donnell, Kerry | - |
dc.contributor.author | Estrada-Rodriguez, Tania L. | - |
dc.contributor.author | Lee, Yong-Hwan | - |
dc.contributor.author | Cheong, Kyeongchae | - |
dc.contributor.author | Wallace, Emma C. | - |
dc.contributor.author | McGee, Chyanna T. | - |
dc.contributor.author | Kang, Seogchan | - |
dc.contributor.author | Geiser, David M. | - |
dc.date.accessioned | 2022-10-04T08:28:06Z | - |
dc.date.available | 2022-10-04T08:28:06Z | - |
dc.date.created | 2022-06-16 | - |
dc.date.issued | 2022-06 | - |
dc.identifier.citation | Plant Disease, Vol.106 No.6, pp.1610-1616 | - |
dc.identifier.issn | 0191-2917 | - |
dc.identifier.uri | https://hdl.handle.net/10371/185218 | - |
dc.description.abstract | Species within Fusarium are of global agricultural, medical, and food/feed safety concern and have been extensively characterized. However, accurate identification of species is challenging and usually requires DNA sequence data FUSARIUM-ID (http://isoiate.fusariumdb.org/blast. php) is a publicly available database designed to support the identification of Fusarium species using sequences of multiple phylogenetically informative loci, especially the highly informative similar to 680-bp 5' portion of the translation elongation factor 1-alpha (TEF1) gene that has been adopted as the primary barcoding locus in the genus. However, FUSARIUM-ID v. 1.0 and 2.0 had several limitations, including inconsistent metadata annotation for the archived sequences and poor representation of some species complexes and marker loci. Here, we present FUSARIUM-ID v.3.0, which provides the following improvements: (i) additional and updated annotation of metadata for isolates associated with each sequence, (ii) expanded taxon representation in the TEF1 sequence database, (iii) availability of the sequence database as a downloadable file to enable local BLAST queries, and (iv) a tutorial file for users to perform local BLAST searches using either freely available software, such as SequenceServer, BLAST+ executable in the command line, and Galaxy, or the proprietary Geneious software. FUSARIUM-ID will be updated on a regular basis by archiving sequences of TEF1 and other loci from newly identified species and greater in-depth sampling of currently recognized species. | - |
dc.language | 영어 | - |
dc.publisher | American Phytopathological Society | - |
dc.title | FUSARIUM-ID v.3.0: An Updated, Downloadable Resource for Fusarium Species Identification | - |
dc.type | Article | - |
dc.identifier.doi | 10.1094/PDIS-09-21-2105-SR | - |
dc.citation.journaltitle | Plant Disease | - |
dc.identifier.wosid | 000793049000003 | - |
dc.identifier.scopusid | 2-s2.0-85131271003 | - |
dc.citation.endpage | 1616 | - |
dc.citation.number | 6 | - |
dc.citation.startpage | 1610 | - |
dc.citation.volume | 106 | - |
dc.description.isOpenAccess | N | - |
dc.contributor.affiliatedAuthor | Lee, Yong-Hwan | - |
dc.contributor.affiliatedAuthor | Cheong, Kyeongchae | - |
dc.type.docType | Article | - |
dc.description.journalClass | 1 | - |
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