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High-quality draft genome sequence of Gracilimonas tropica CL-CB462T (DSM 19535T), isolated from a Synechococcus culture

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Authors
Choi, Dong Han; Ahn, Chisang; Jang, Gwang Il; Lapidus, Alla; Han, James; Reddy, T. B K; Huntemann, Marcel; Pati, Amrita; Ivanova, Natalia; Markowitz, Victor; Rohde, Manfred; Tindall, Brian; Göker, Markus; Woyke, Tanja; Klenk, Hans-Peter; Kyrpides, Nikos C; Cho, Byung Cheol
Issue Date
2015-11-11
Publisher
BioMed Central
Citation
Standards in Genomic Sciences, 10(1):98
Keywords
GenomeGracilimonas tropicaMarineSphingobacteriiaGEBA
Description
This article is distributed under the terms of the Creative Commons Attribution 4.0
International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and
reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to
the Creative Commons license.
Abstract
Abstract

Gracilimonas tropica Choi et al. 2009 is a member of order Sphingobacteriales, class Sphingobacteriia. Three species of the genus Gracilimonas have been isolated from marine seawater or a salt mine and showed extremely halotolerant and mesophilic features, although close relatives are extremely halophilic or thermophilic. The type strain of the type species of Gracilimonas, G. tropica DSM19535T, was isolated from a Synechococcus culture which was established from the tropical sea-surface water of the Pacific Ocean. The genome of the strain DSM19535T was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes project. Here, we describe the genomic features of the strain. The 3,831,242 bp long draft genome consists of 48 contigs with 3373 protein-coding and 53 RNA genes. The strain seems to adapt to phosphate limitation and requires amino acids from external environment. In addition, genomic analyses and pasteurization experiment suggested that G. tropica DSM19535T did not form spore.
Language
English
URI
https://hdl.handle.net/10371/100325
DOI
https://doi.org/10.1186/s40793-015-0088-8
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College of Natural Sciences (자연과학대학)Dept. of Earth and Environmental Sciences (지구환경과학부)Journal Papers (저널논문_지구환경과학부)
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