S-Space College of Agriculture and Life Sciences (농업생명과학대학) Program in Agricultural Biotechnology (협동과정-농업생물공학전공) Journal Papers (저널논문_협동과정-농업생물공학전공)
Fungal cytochrome P450 database
- Park, Jongsun; Lee, Seungmin; Choi, Jaeyoung; Ahn, Kyohun; Park, Bongsoo; Park, Jaejin; Kang, Seogchan; Lee, Yong-Hwan
- Issue Date
- BioMed Central
- BMC Genomics, 9(1):402
- This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Cytochrome P450 enzymes play critical roles in fungal biology and ecology. To support studies on the roles and evolution of cytochrome P450 enzymes in fungi based on rapidly accumulating genome sequences from diverse fungal species, an efficient bioinformatics platform specialized for this super family of proteins is highly desirable.
The Fungal Cytochrome P450 Database (FCPD) archives genes encoding P450s in the genomes of 66 fungal and 4 oomycete species (4,538 in total) and supports analyses of their sequences, chromosomal distribution pattern, and evolutionary histories and relationships. The archived P450s were classified into 16 classes based on InterPro terms and clustered into 141 groups using tribe-MCL. The proportion of P450s in the total proteome and class distribution in individual species exhibited certain taxon-specific characteristics.
The FCPD will facilitate systematic identification and multifaceted analyses of P450s at multiple taxon levels via the web. All data and functions are available at the web site http://p450.riceblast.snu.ac.kr/.