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Comparative genome analysis of rice-pathogenic Burkholderia provides insight into capacity to adapt to different environments and hosts

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dc.contributor.authorSeo, Young-Su-
dc.contributor.authorLim, Jae Yun-
dc.contributor.authorPark, Jungwook-
dc.contributor.authorKim, Sunyoung-
dc.contributor.authorLee, Hyun-Hee-
dc.contributor.authorCheong, Hoon-
dc.contributor.authorKim, Sang-Mok-
dc.contributor.authorMoon, Jae Sun-
dc.contributor.authorHwang, Ingyu-
dc.date.accessioned2017-02-07T05:24:22Z-
dc.date.available2017-02-07T05:24:22Z-
dc.date.issued2015-05-06-
dc.identifier.citationBMC Genomics, 16(1):349ko_KR
dc.identifier.urihttps://hdl.handle.net/10371/100475-
dc.descriptionThis is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited.ko_KR
dc.description.abstractBackground
In addition to human and animal diseases, bacteria of the genus Burkholderia can cause plant diseases. The representative species of rice-pathogenic Burkholderia are Burkholderia glumae, B. gladioli, and B. plantarii, which primarily cause grain rot, sheath rot, and seedling blight, respectively, resulting in severe reductions in rice production. Though Burkholderia rice pathogens cause problems in rice-growing countries, comprehensive studies of these rice-pathogenic species aiming to control Burkholderia-mediated diseases are only in the early stages.

Results
We first sequenced the complete genome of B. plantarii ATCC 43733T. Second, we conducted comparative analysis of the newly sequenced B. plantarii ATCC 43733T genome with eleven complete or draft genomes of B. glumae and B. gladioli strains. Furthermore, we compared the genome of three rice Burkholderia pathogens with those of other Burkholderia species such as those found in environmental habitats and those known as animal/human pathogens. These B. glumae, B. gladioli, and B. plantarii strains have unique genes involved in toxoflavin or tropolone toxin production and the clustered regularly interspaced short palindromic repeats (CRISPR)-mediated bacterial immune system. Although the genome of B. plantarii ATCC 43733T has many common features with those of B. glumae and B. gladioli, this B. plantarii strain has several unique features, including quorum sensing and CRISPR/CRISPR-associated protein (Cas) systems.

Conclusions
The complete genome sequence of B. plantarii ATCC 43733T and publicly available genomes of B. glumae BGR1 and B. gladioli BSR3 enabled comprehensive comparative genome analyses among three rice-pathogenic Burkholderia species responsible for tissue rotting and seedling blight. Our results suggest that B. glumae has evolved rapidly, or has undergone rapid genome rearrangements or deletions, in response to the hosts. It also, clarifies the unique features of rice pathogenic Burkholderia species relative to other animal and human Burkholderia species.
ko_KR
dc.language.isoenko_KR
dc.publisherBioMed Centralko_KR
dc.subjectBurkholderia gladioliko_KR
dc.subjectB. glumaeko_KR
dc.subjectB. plantariiko_KR
dc.subjectComparative genomicsko_KR
dc.subjectPathogenko_KR
dc.subjectRiceko_KR
dc.titleComparative genome analysis of rice-pathogenic Burkholderia provides insight into capacity to adapt to different environments and hostsko_KR
dc.typeArticleko_KR
dc.contributor.AlternativeAuthor서영수-
dc.contributor.AlternativeAuthor임재윤-
dc.contributor.AlternativeAuthor박정욱-
dc.contributor.AlternativeAuthor김선영-
dc.contributor.AlternativeAuthor이현희-
dc.contributor.AlternativeAuthor정훈-
dc.contributor.AlternativeAuthor김상목-
dc.contributor.AlternativeAuthor문재선-
dc.contributor.AlternativeAuthor황인규-
dc.identifier.doi10.1186/s12864-015-1558-5-
dc.language.rfc3066en-
dc.rights.holderSeo et al.; licensee BioMed Central.-
dc.date.updated2017-01-06T10:06:07Z-
Appears in Collections:
College of Agriculture and Life Sciences (농업생명과학대학)Program in Agricultural Biotechnology (협동과정-농업생물공학전공)Journal Papers (저널논문_협동과정-농업생물공학전공)
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