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Production of 2,3-butanediol from cellulosic biomass by metabolically engineered Saccharomyces cerevisiae : 대사공학적으로 설계된 재조합 효모를 이용한 목질계 바이오매스로부터 2,3-butanediol 생산

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dc.contributor.advisor서진호-
dc.contributor.author김수정-
dc.date.accessioned2017-07-13T08:20:06Z-
dc.date.available2017-07-13T08:20:06Z-
dc.date.issued2014-02-
dc.identifier.other000000017439-
dc.identifier.urihttps://hdl.handle.net/10371/119455-
dc.description학위논문 (박사)-- 서울대학교 대학원 : 농생명공학부, 2014. 2. 서진호.-
dc.description.abstract2,3-Butanediol (2,3-BD) is a platform chemical with wide industrial applications. Most microbial fermentations for 2,3-BD production have been focused on pathogenic bacteria, which makes large-scale fermentation difficult in terms of safety and industrialization.
Since Saccharomyces cerevisiae, a popular GRAS (Generally Recognized As Safe) microorganism, is known to produce a trace amount of 2,3-BD naturally, the bakers yeast was metabolically engineered for efficient production of 2,3-BD by introducing the 2,3-BD metabolic pathways and by modulating the central carbon metabolism. A fed-batch fermentation strategy was optimized in order to enhance a final 2,3-BD concentration. To intensify the 2,3-BD biosynthetic pathway, the alsS gene encoding α-acetolactate synthase and the alsD gene encoding α-acetolactate decarboxylase both from Bacillus subtilis and the endogenous BDH1 gene coding for 2,3-BD dehydrogenase were overexpressed in the wild-type S. cerevisiae (D452-2). The resulting strain of S. cerevisiae BD0 showed approximately a 10-fold increase in 2,3-BD production compared to the wild strain, but still produced unfavorable ethanol as a major metabolite.
To increase 2,3-BD production through eliminating ethanol production, a pyruvate decarboxylase (Pdc)-deficient mutant (SOS4) was used as a host for 2,3-BD production. The SOS4 strain grew in a glucose medium and accumulated pyruvate from glucose, a key intermediate for 2,3-BD, without ethanol production. When the alsS and alsD genes from B. subtilis and the endogenous BDH1 gene were overexpressed in the SOS4, the resulting strain (BD4) not only produced 2,3-BD with a high yield of 0.34 g 2,3-BD/g glucose, but also consumed glucose faster than the parental strain. In a fed-batch fermentation under the optimum aeration condition, 2,3-BD concentration increased up to 96.2 g/L from glucose.
The use of xylose that is abundant in lignocellulosic hydrolyzate would make the production of 2,3-BD more sustainable and economical. However, S. cerevisiae cannot ferment xylose as a sole carbon source. For xylose utilization, the XYL1, XYL2, and XYL3 genes coding for xylose reductase (XR), xylitol dehydrogenase (XDH), and xylulokinase (XK) derived from Scheffersomyces stipitis were introduced into the SOS4 strain. The resulting strain (SOS4X) accumulated pyruvate by using xylose without ethanol production. Additionally, the alsS and alsD genes from B. subtilis and the endogenous BDH1 gene were overexpressed in the SOS4X for production of 2,3-BD from xylose. As a result, the resulting strain (BD4X) produced 20.7 g/L 2,3-BD with a yield of 0.27 g 2,3-BD/g xylose, showing that (R, R)-2,3-BD was dominantly produced. The titer of 2,3-BD from xylose increased up to 43.6 g/L in a fed-batch fermentation. These results suggest that S. cerevisiae might be a promising host for producing 2,3-BD from lignocellulosic biomass for industrial applications.
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dc.description.tableofcontentsChapter 1
Literature review:
Characteristics and microbial production of 2,3-butandiol (2,3-BD) 1
1.1. 2,3-Butanediol (2,3-BD) 2
1.2. Biosynthesis of 2,3-BD in bacteria 5
1.3. Biosynthesis of 2,3-BD in Saccharomyces cerevisiae 6
1.4. Pyruvate decarboxylase-deficient S. cerevisiae 8
1.5. Objectives of the dissertation 11

Chapter 2
Production of 2,3-butanediol (2,3-BD) through complementing the 2,3-BD biosynthetic pathway of Saccharomyces cerevisiae 19
2.1. Summary 20
2.2. Introduction 21
2.3. Materials and Methods 23
2.4. Results 26
2.4.1. 2,3-BD tolerance test of S. cerevisiae 26
2.4.2. Construction of the efficient 2,3-BD biosynthesis pathway of S. cerevisiae 27
2.5. Discussion 28

Chapter 3
Production of 2,3-butanediol (2,3-BD) by pyruvate decarboxylase-deficient Saccharomyces cerevisiae 34
3.1. Summary 35
3.2. Introduction 36
3.3. Materials and Methods 39
3.4. Results 43
3.4.1. Confirmation of the evolved Pdc-deficient S. cerevisiae (SOS4) 43
3.4.2. Production of 2,3-BD by the SOS4 strain with the 2,3-BD biosynthetic pathway (BD4) 44
3.4.3. Effect of oxygen supply on 2,3-BD production by the BD4 strain 46
3.4.4. Fed-batch fermentations and cell-recycling fermentation by the BD4 strain 47
3.5. Discussion 49

Chapter 4
Production of 2,3-butanediol (2,3-BD) from xylose by pyruvate decarboxylase-deficient Saccharomyces cerevisiae 70
4.1. Summary 71
4.2. Introduction 73
4.3. Materials and Methods 76
4.4. Results 80
4.4.1. Construction of a xylose-fermenting S. cerevisiae
accumulating pyruvate (SOS4X) 80
4.4.2. 2,3-BD production from xylose by the SOS4X strain with the 2,3-BD biosynthetic pathway (BD4X) 81
4.4.3. Characterization of stereoisomer of 2,3-BD produced from sugars by the BD4X strain 82
4.4.4. Enhanced 2,3-BD production by the BD4X strain under fed-batch fermentation conditions 83
4.5. Discussion 85

Chapter 5
Conclusions 103
References 107

국문 초록 122

Appendix
A. Deletion of the PDC1 and PDC5 genes and laboratory evolution for construction of the SOS4 strain 125
B. List of primers used in this study 126
C. Production of 2,3-BD by the SOS4 strain harboring genes involved in 2,3-BD biosynthetic pathway 128
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dc.formatapplication/pdf-
dc.format.extent7906289 bytes-
dc.format.mediumapplication/pdf-
dc.language.isoen-
dc.publisher서울대학교 대학원-
dc.subject2-
dc.subject3-Butanediol (2-
dc.subject3-BD)-
dc.subjectpyruvate decarboxylase (Pdc)-deficient S. cerevisiae-
dc.subjectxylose-
dc.subjectlignocellulosic biomass-
dc.subjectfed-batch fermentation-
dc.subject.ddc630-
dc.titleProduction of 2,3-butanediol from cellulosic biomass by metabolically engineered Saccharomyces cerevisiae-
dc.title.alternative대사공학적으로 설계된 재조합 효모를 이용한 목질계 바이오매스로부터 2,3-butanediol 생산-
dc.typeThesis-
dc.contributor.AlternativeAuthorSoo-Jung Kim-
dc.description.degreeDoctor-
dc.citation.pages128-
dc.contributor.affiliation농업생명과학대학 농생명공학부-
dc.date.awarded2014-02-
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