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Molecular Analysis of the Vibrio vulnificus Genes Encoding N-acetylglucosamine Binding Protein and Phospholipase A2 Induced by Mucin : 뮤신에 의해 유도되는 패혈증비브리오균의 N-acetylglucosamine 부착단백질과 Phospholipase A2를 암호화하는 유전자의 분자 수준 분석
DC Field | Value | Language |
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dc.contributor.advisor | 최상호 | - |
dc.contributor.author | 장경구 | - |
dc.date.accessioned | 2017-07-13T08:25:27Z | - |
dc.date.available | 2017-07-13T08:25:27Z | - |
dc.date.issued | 2016-08 | - |
dc.identifier.other | 000000137396 | - |
dc.identifier.uri | https://hdl.handle.net/10371/119534 | - |
dc.description | 학위논문 (박사)-- 서울대학교 대학원 : 농생명공학부, 2016. 8. 최상호. | - |
dc.description.abstract | Mucin is a glycoprotein composed of a polypeptide backbone with branched oligosaccharide side chains and a major component of mucus layer that serves as the first line of defense against many enteric pathogens. To survive and cause disease, the pathogens interact with mucin and change their transcriptomic profile to adapt to the host environment. In this study, to better understand the bacteriums interactions to the mucus layer, transcriptional response of Vibrio vulnificus to the mucin and the mucin-secreting HT29-methotrexate (MTX) cells was investigated. The growth and survival of V. vulnificus cells exposed to M9 medium supplemented with 0.6% (wt/vol) mucin (M9M) and the HT29-MTX cells were monitored, respectively. To monitor the levels of all transcripts in the bacteria grown in the M9 medium supplemented with 0.4% (wt/vol) glucose (M9G) and M9M, RNA-seq technology was used. Also, transcriptomes of the bacteria exposed to basal medium eagle (BME) and the HT29-MTX cells was analyzed using the same technology. From the analysis, 337 genes were identified to be differentially expressed with significance between M9G and M9M. In addition, the analysis and comparison of RNA-seq data identified 650 genes with altered transcript level in the bacteria exposed to the HT29-MTX cells compared to BME. Furthermore, several virulence related genes encoding metalloprotease, N-acetylglucosamine binding protein, cytolysin, and phospholipase were induced by the mucin and the mucin-secreting host cells.
Among the genes whose expression was up-regulated when V. vulnificus cells were grown in M9M, a gene encoding an N-acetylglucosamine binding protein GbpA, a homologue of Vibrio cholerae GbpA, was selected and further studied. A mutational analysis demonstrated that GbpA contributes to the ability of adherence to the HT29-MTX cells as well as the mucin. Furthermore, compared with the wild type, the gbpA mutant exhibited reduced intestinal colonization and virulence in mice. The gbpA transcription was growth-phase dependent, reaching a maximum during the exponential phase. The Fe-S cluster regulator (IscR) and the cyclic AMP receptor protein (CRP) coactivated whereas SmcR, a LuxR homologue, repressed gbpA expression at the transcriptional level. The cellular levels of IscR, CRP, and SmcR were not significantly affected by one another, indicating that the regulator proteins function cooperatively to regulate gbpA rather than sequentially in a regulatory cascade. Primer extension analysis revealed that the transcription of gbpA begins at a single site. Direct bindings of IscR, SmcR, and CRP to PgbpA were demonstrated by EMSA. The binding sites for the regulator proteins were mapped based on a deletion analysis of the PgbpA and confirmed by DNase I protection assays. Interestingly, gbpA was induced by exposure to H2O2, and the induction appeared to be mediated by elevated intracellular levels of IscR. The combined results proposed a model in which IscR, CRP, and SmcR cooperate for precise control of the gbpA expression during infection. Among the V. vulnificus genes specifically induced by exposure to the mucin and the mucin-secreting host cells, a gene, annotated as plp encoding a putative phospholipase Plp, was identified and further characterized. The amino acid sequences of V. vulnificus Plp (VvPlp) were 67% identical to those of Vibrio anguillarum phospholipase (VaPlp). To examine the role of VvPlp, a mutant with disruption of the plp gene was constructed by allelic exchanges, and its virulence was evaluated. Compared with the wild type, the plp mutant showed a low level of cytotoxicity toward the HT29-MTX cells and reduced virulence in mice. Genetic and biochemical analyses using the recombinant Plp protein demonstrated that Plp is a secreted phospholipase A2 essential for pathogenesis of V. vulnificus. Examination of global regulatory proteins on the expression of plp revealed that the transcription activator HlyU and CRP upregulate the plp expression. The cellular levels of HlyU and CRP were not significantly affected by one another, indicating that the regulator proteins function cooperatively to activate plp rather than sequentially in a regulatory cascade. The regulatory proteins directly bound to the upstream of the plp promoter Pplp. DNase I protection assays, together with the deletion analyses of Pplp, demonstrated that HlyU binds three distinct sequences centered at -174, -139.5, and -109.5 and CRP binds specifically to the sequences centered at -69.5 relative to the transcription start site of Pplp. Consequently, the combined results indicated that V. vulnificus plp encodes a phospholipase A2 essential for virulence and is cooperatively activated by HlyU and CRP. | - |
dc.description.tableofcontents | Chapter I. Background 1
I-1. Vibrio vulnificus 2 I-1-1. Disease caused by V. vulnificus 3 I-1-2. Virulence factors of V. vulnificus 5 I-1-3. Regulation of virulence factors in V. vulnificus 12 I-2. Mucus layer 16 I-2-1. Mucus layer and mucin 16 I-2-2. Pathogens strategies to penetrate and avoid the mucus layer 17 I-3. Objective of this study 20 Chapter II. Identification of Vibrio vulnificus gbpA and plp Genes Induced by Mucin and Mucin-secreting HT29-MTX Cell Using RNA-sequencing 21 II-1. Introduction 22 II-2. Materials and Methods 26 II-2-1. Strains, plasmids, and culture conditions 26 II-2-2. Growth kinetics of V. vulnificus 30 II-2-3. Development of the mucin-secreting cells and survival kinetics of V. vulnificus 31 II-2-4. RNA preparation, library construction, and sequencing 32 II-2-5. First and second strand synthesis 33 II-2-6. DNA fragmentation and preparation of libraries for Illumina sequencing platform 35 II-2-7. Sequencing and data analysis 36 II-3. Results and Discussion 37 II-3-1. Growth kinetics of V. vulnificus 37 II-3-2. Survival kinetics of V. vulnificus 39 II-3-3. Summary statistics for the RNA-seq data 42 II-3-4. Effect of mucin as a sole carbon source on the transcriptional change of V. vulnificus 44 II-3-5. Effect of exposure to the mucin-secreting host cell on the transcriptional change of V. vulnificus 45 II-3-6. Genes up-regulated by mucin and mucin-secreting HT29-MTX cells 51 II-3-7. Genes down-regulated by mucin and mucin-secreting HT29-MTX cells 83 Chapter III. Functional Analysis and Regulatory Characteristics of Vibrio vulnificus gbpA Encoding a Mucin-binding Protein 111 III-1. Introduction 112 III-2. Materials and Methods 116 III-2-1. Strains, plasmids, and culture conditions 116 III-2-2. Generation and complementation of the gbpA and iscR crp mutants 117 III-2-3. Mucin binding assay 123 III-2-4. Adhesion assay 124 III-2-5. Mouse lethality and competition assay 125 III-2-6. RNA purification and transcript analysis 127 III-2-7. Protein purification and Western blot analysis 129 III-2-8. Electrophoretic mobility shift assay (EMSA) 130 III-2-9. Construction of a set of gbpA-luxCDABE transcriptional fusions 131 III-2-10. DNase I protection assay 132 III-2-11. Data analysis 132 III-3. Results 133 III-3-1. Identification and sequence analysis of GbpA 133 III-3-2. GbpA is essential for mucin binding and virulence of V. vulnificus 134 III-3-3. Expression of gbpA is growth-phase dependent and regulated by IscR, CRP, and SmcR 140 III-3-4. IscR and CRP coactivate gbpA additively 144 III-3-5. IscR, CRP, and SmcR function cooperatively rather than sequencially to regulate gbpA 146 III-3-6. Mapping the regulatory region of gbpA 149 III-3-7. IscR, CRP, and SmcR regulate gbpA by directly binding to PgbpA 155 III-3-8. Identification of binding sites for IscR, CRP, and SmcR 159 III-3-9. IscR activates PgbpA by sensing reactive oxygen species (ROS) 163 III-4. Discussion 167 Chapter IV. Functional Analysis and Regulatory Characteristics of Vibrio vulnificus plp Encoding a Phospholipase A2 172 IV-1. Introduction 173 IV-2. Materials and Methods 177 IV-2-1. Strains, plasmids, and culture conditions 177 IV-2-2. Complementation and generation of the plp, hlyU, and hlyU crp mutants 177 IV-2-3. Protein purification 179 IV-2-4. Preparation of polyclonal antibody and Western blot analysis 181 IV-2-5. Cytotoxicity and mouse lethality 182 IV-2-6. Phospholipase A2 (PLA2) activity assay 183 IV-2-7. RNA purification and transcripts analysis 184 IV-2-8. Construction of a set of plp-luxCDABE transcriptional fusions 185 IV-2-9. Electrophoretic mobility shift assay (EMSA) and DNase I protection assay 186 IV-2-10. Data analyses 187 IV-3. Results 188 IV-3-1. Identification and sequence analysis of Plp 188 IV-3-2. Plp is essential for cytotoxicity toward mucin secreting host cells in vitro and virulence in mice 189 IV-3-3. Plp is a phospholipase A2 and secreted via the T2SS. 193 IV-3-4. Expression of plp is growth-phase dependent and regulated by HlyU and CRP 197 IV-3-5. HlyU and CRP coactivates plp additively 200 IV-3-6. HlyU and CRP function cooperatively rather than sequentially to regulate plp 203 IV-3-7. Mapping the regulatory region of plp 205 IV-3-8. HlyU and CRP regulate plp by directly binding to Pplp 211 IV-3-9. Identification of binding sites for HlyU and CRP 214 IV-4. Discussion 218 Chapter V. Conclusion 222 References 226 국문 초록 250 | - |
dc.format | application/pdf | - |
dc.format.extent | 3511292 bytes | - |
dc.format.medium | application/pdf | - |
dc.language.iso | en | - |
dc.publisher | 서울대학교 대학원 | - |
dc.subject | Vibrio vulnificus | - |
dc.subject | Mucin | - |
dc.subject | Transcriptome analysis | - |
dc.subject | Pathogenesis | - |
dc.subject | N-acetylglucosamine binding protein (GbpA) | - |
dc.subject | Phospholipase A2 (Plp) | - |
dc.subject | Gene regulation | - |
dc.subject | IscR | - |
dc.subject | CRP | - |
dc.subject | SmcR | - |
dc.subject | HlyU | - |
dc.subject.ddc | 630 | - |
dc.title | Molecular Analysis of the Vibrio vulnificus Genes Encoding N-acetylglucosamine Binding Protein and Phospholipase A2 Induced by Mucin | - |
dc.title.alternative | 뮤신에 의해 유도되는 패혈증비브리오균의 N-acetylglucosamine 부착단백질과 Phospholipase A2를 암호화하는 유전자의 분자 수준 분석 | - |
dc.type | Thesis | - |
dc.contributor.AlternativeAuthor | Kyung Ku Jang | - |
dc.description.degree | Doctor | - |
dc.citation.pages | 253 | - |
dc.contributor.affiliation | 농업생명과학대학 농생명공학부 | - |
dc.date.awarded | 2016-08 | - |
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