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Structural and functional studies of the DJ-1/ThiJ/PfpI superfamily proteins from Staphylococcus aureus : 포도상구균 유래의 DJ-1/ThiJ/PfpI superfamily 단백질에 대한 구조와 기능 연구

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dc.contributor.advisor이봉진-
dc.contributor.author김효정-
dc.date.accessioned2017-07-13T16:37:49Z-
dc.date.available2019-04-17-
dc.date.issued2016-02-
dc.identifier.other000000132848-
dc.identifier.urihttps://hdl.handle.net/10371/120124-
dc.description학위논문 (박사)-- 서울대학교 대학원 : 약학대학 약학과 물리약학전공, 2016. 2. 이봉진.-
dc.description.abstractStaphylococcus aureus is one of the most common pathogen that causes various diseases ranging from mild infections, such as skin infections and food poisoning, to life threatening infections, such as sepsis, endocarditis, and toxic shock syndrome. However, S. aureus has adapted to circumvent therapeutic strategies by developing resistance to antibiotics and becoming problems. The DJ-1/ThiJ/PfpI superfamily is a group of proteins over diverse organisms. This superfamily includes versatile proteins, such as proteases, chaperones, heat shock proteins and human Parkinsons disease protein. SAV0551 and SAV1875, conserved proteins from S. aureus, are members of the DJ-1/ThiJ/PfpI superfamily. However, their structure and function remain unknown. Thus, to understand the function and activity mechanism of these proteins, the crystal structure of SAV0551 and SAV1875 from S. aureus was determined. Their conserved cysteine residue forms a catalytic triad with histidine and aspartate. In particular, cysteine in SAV1875 is spontaneously oxidized to Cys105-SO2H in the crystal structure. To study the oxidative propensity of Cys105 in SAV1875 and the corresponding functional differences with changes in cysteine oxidation state, the crystal structures of SAV1875 variants, E17N, E17D, C105D, and over-oxidized SAV1875 were determined. The overall fold of SAV1875 and SAV0551 is similar to that observed for the DJ-1/ThiJ/PfpI superfamily. We identified SAV1875 as a novel member of the YhbO-type subfamily exhibiting chaperone function and SAV0551 as a member of Hsp-type subfamily that has chaperone and glyoxalase function. The chaperone activity was based on the surface structure, but if SAV1875 is over-oxidized further with H2O2, its chaperone activity is eliminated.-
dc.description.tableofcontentsChapter I. Introduction 1
1.1. Staphylococcus aureus 1
1.1.1. Features of Staphylococcus aureus 1
1.1.2. Antibiotic resistance of Staphylococcus aureus 2
1.2. DJ-1/ThiJ/PfpI superfamily 3
1.2.1. Introduction of DJ-1/ThiJ/PfpI superfamily 3
1.2.2. Classification of DJ-1/ThiJ/PfpI superfamily 3
1.2.3. Protein members of DJ-1/ThiJ/PfpI superfamily 5
1.3. Research goals 5

Chapter II. The structure and function of SAV0551 9
2.1. Introduction 9
2.2. Materials and Methods 11
2.2.1. Cloning, protein expression, and purification 11
2.2.2. Crystallization and data collection 12
2.2.3. Structure determination and refinement 13
2.2.4. Determination of chaperone activity 13
2.2.5. Determination of glutathione independent glyoxalase activity 14
2.3. Results 15
2.3.1. Structure of SAV0551 15
2.3.2. Oligomeric state of SAV 0551 17
2.3.3. Catalytic triad of SAV 0551 20
2.3.4. SAV0551 has chaperon activity 22
2.3.5. SAV0551 has glutathione independent glyoxalase activity 23
2.4. Discussion 26

Chapter III. The structure and function of SAV1875 29
3.1. Introduction 29
3.2. Materials and Methods 31
3.2.1. Cloning, protein expression, and purification 31
3.2.2. Crystallization and data collection 33
3.2.3. PAGE 34
3.2.4. Mass spectrometry 34
3.2.5. Protein oxidation 35
3.2.6. Circular Dichroism (CD) 35
3.2.7. Protease activity assay and zymogram 36
3.2.8. Determination of chaperone activity 37
3.3. Results 37
3.3.1. Structure of SAV 1875 37
3.3.2. Oligomeric state of SAV 1875 40
3.3.3. Comparison of SAV1875 with DJ-1 superfamily proteins 43
3.3.4. Stabilization of oxidized Cys105 45
3.3.5. Oxidation propensity of Cys105 in SAV 1875 51
3.3.6. Protease activity of SAV1875 was not detected 55
3.3.7. SAV1875 has chaperon activity 57
3.4. Discussion 59

Chapter IV. Summary 62

References 63

Korean Abstract (국문초록) 71
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dc.formatapplication/pdf-
dc.format.extent11735695 bytes-
dc.format.mediumapplication/pdf-
dc.language.isoen-
dc.publisher서울대학교 대학원-
dc.subjectDJ-1/ThiJ/PfpI superfamily-
dc.subjectStaphylococcus aureus-
dc.subjectcysteine-
dc.subjectoxidation-
dc.subjectchaperone-
dc.subject.ddc615-
dc.titleStructural and functional studies of the DJ-1/ThiJ/PfpI superfamily proteins from Staphylococcus aureus-
dc.title.alternative포도상구균 유래의 DJ-1/ThiJ/PfpI superfamily 단백질에 대한 구조와 기능 연구-
dc.typeThesis-
dc.description.degreeDoctor-
dc.citation.pages72-
dc.contributor.affiliation약학대학 약학과-
dc.date.awarded2016-02-
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