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Regulation of methionine biosynthesis genes by quorum sensing in Burkholderia glumae

DC Field Value Language
dc.contributor.advisor황인규-
dc.contributor.author정혜성-
dc.date.accessioned2017-07-14T06:40:25Z-
dc.date.available2017-07-14T06:40:25Z-
dc.date.issued2014-02-
dc.identifier.other000000016922-
dc.identifier.urihttps://hdl.handle.net/10371/125827-
dc.description학위논문 (석사)-- 서울대학교 대학원 : 농생명공학부, 2014. 2. 황인규.-
dc.description.abstractBurkholderia glumae is a Gram-negative bacterium that produces a broad-spectrum phytotoxin, called toxoflavin. Toxoflavin production is dependent on the TofI/TofR quorum sensing system, which is mediated by N-octanoyl homoserine lactone (C8-HSL). C8-HSL is biosynthesized by TofI and its cognate receptor is TofR. The TofR/C8-HSL complex activates the expression of toxoflavin biosynthesis and an IclR-type transcriptional regulator gene, qsmR.
Quorum sensing is a cell-to-cell signaling mechanism that refers to the ability of bacteria to respond to small diffusible autoinducers. When an autoinducer reaches a critical threshold, the bacteria detect and respond to the signals to alter gene expressions. Autoinducer is a byproduct of the activated methyl cycle (AMC), which is a central metabolic pathway responsible for the methylation of cellular components and the recycling of certain sulfur-containing amino acids. The last step of AMC involves the methylation of homocysteine to produce methionine. In Escherichia coli, there are two different enzymes, MetH and MetE, that catalyze methionine biosynthesis. MetH is dependent on vitamin B12 whereas MetE is not. In B. glumae, there are two metE homologs, metE1 and metE2, and a metH gene is split into two genes, metH1 and metH2.
The objectives of this study are to determine if methionine biosynthesis is regulated by quorum sensing and identify regulation mechanisms of quorum sensing-dependent methionine biosynthesis genes in B. glumae. The metE1, metE2, or metH1-2 mutant showed similar growth rates as the wild type strain BGR1 in M9 minimal medium supplemented with 0.2% glucose. The metE1, metE2, and metH1-2 triple mutant was a methionine auxotroph. Autoinducer assay using a Chromobacterium violaceum biosensor on TLC plates indicated that there was no significant difference in C8-HSL production between the methionine biosynthesis gene mutants and the wild-type strain. Vitamin B12 bioassay provided indirect evidence for the vitamin B12 biosynthesis in B. glumae. Expression of metE1 is up-regulated by quorum sensing as proved by reverse transcription and real-time PCR experiments. Expression of metE2 was not expressed at a detectable level
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dc.description.abstracthowever, its expression was activated in the absence of metH in a QS-dependent manner. These results indicate that methionine biosynthesis is controlled by quorum sensing-
dc.description.abstracthowever, its biological meaning is still under investigation.-
dc.description.tableofcontentsCONTENTS

ABSTRACT..........................................................................................ⅰ
TABLE OF CONTENTS......................................................................iv
LIST OF TABLES.................................................................................vi
LIST OF FIGURES ............................................................................. vii

INTRODUCTION..................................................................................1
MATERIALS AND METHODS...........................................................5
1. Bacterial strains, plasmids and growth conditions........................5
2. Enzyme and DNA manipulation....................................................5
2.1. Small-scale plasmid DNA isolation........................................5
2.2. Restriction enzyme digestion and
agarose gel-electrophoresis.....................................................6
2.3. Isolation of DNA fragment from agarose gel.........................7
2.4. Preparation of genomic DNA ................................................7
3. Transposon mutagenesis.......................................................................8
4. DNA sequencing and data analysis...................................................9
5. Autoinducer assay..........................................................................9
6. Vitamin B12 bioassay.....................................................................11
7. Overexpression and purification of TofR and QsmR.................12
8. Gel mobility shift assay..............................................................12
9. Reverse transcription polymerase chain reaction (RT-PCR)
and real-time PCR analysis..........................................................13
10. Viable cell counts......................................................................14

RESULTS.............................................................................................15
1. The metE1, metE2, and metH1-2 triple mutant is a methionine
auxotroph in B. glumae..................................................................15
2. C8-HSL production of mutants involved in methionine
biosynthesis in B. glumae..............................................................15
3. Indirect evidence of the vitamin B12 biosynthesis in B. glumae.....16
4. Quorum sensing activates the metE1 expression at
transcriptional level.........................................................................17
5. TofR and QsmR bind to the metE1 promoter region.......................18
6. Expression of metE2 is dependent on the presence of metH...........19

DISCUSSION........................................................................................20
LITERATURE CITED........................................................................24
ABSTRACT IN KOREAN..................................................................41
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dc.formatapplication/pdf-
dc.format.extent797679 bytes-
dc.format.mediumapplication/pdf-
dc.language.isoen-
dc.publisher서울대학교 대학원-
dc.subjectBurkholderia glumae-
dc.subjectQuorum sensing-
dc.subjectMethionine biosynthesis gene-
dc.subjectActivated methyl cycle-
dc.subject.ddc630-
dc.titleRegulation of methionine biosynthesis genes by quorum sensing in Burkholderia glumae-
dc.typeThesis-
dc.contributor.AlternativeAuthorHyesung Jeong-
dc.description.degreeMaster-
dc.citation.pagesvii, 42-
dc.contributor.affiliation농업생명과학대학 농생명공학부-
dc.date.awarded2014-02-
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