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Effect of intense pulsed light on the deactivation of lipase: enzyme-deactivation kinetics and tertiary structural changes by fragmentation : 광펄스가 라이페이스 활성 감소에 미치는 영향: 효소-불활성화 동역학적 해석 및 단편화에 의한 3차구조 변화

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dc.contributor.advisor장판식-
dc.contributor.author전민식-
dc.date.accessioned2017-07-14T06:44:34Z-
dc.date.available2018-10-25-
dc.date.issued2015-08-
dc.identifier.other000000056824-
dc.identifier.urihttps://hdl.handle.net/10371/125908-
dc.description학위논문 (석사)-- 서울대학교 대학원 : 농생명공학부, 2015. 8. 장판식.-
dc.description.abstractIntense pulsed light (IPL), a novel non-thermal technology, was applied to investigate the effect on activity and structure of Chromobacterium viscosum lipase (triacylglycerol hydrolase, EC 3.1.1.3) by employing hydrolysis of triacylglycerol in reverse micelle system. After IPL treatment, the lipase deactivation was observed, and the lipase activity was decreased with increase of pulse fluence and exposure time. The half-life of Chromobacterium viscosum lipase at 8.79 mJ/cm2 (37.63 min) was 4.76-fold longer than that at 14.86 mJ/cm2 (7.90 min). In order to determine deactivation constants (k1 and k2), two-step series type deactivation kinetic model was employed. As a result, k1 (9.05 h-1) and k2 (1.64 h-1) at 14.86 mJ/cm2 were 3.04, 3.88-fold higher than those at 8.79 mJ/cm2 (2.98 h-1, 0.42 h-1), respectively. Meanwhile, pulse fluence showed a dominant impact on deactivation, in that higher pulse fluence treatment with short exposure time showed more decreased activity at the same degree of total fluence. Also, no activity reduction phenomenon appeared below 2.66 mJ/cm2, demonstrating that the IPL treatment to the lipase was composed of susceptible phase and resistant phase. Based on the experiments in lipase hydrolysis, structural analysis was conducted in order to elucidate the cause of deactivation. From secondary structure analysis using circular dichroism spectroscopy, the result spectra were not fluctuated significantly. However, changes in its tertiary structure were detected through fluorescence spectroscopy. SDS-PAGE results showed that the amount of intact lipase (32 kDa) was reduced in a time dependent manner and uncertain fragmented peptides were increased below the main protein band. For validation of fragmentation sites in the sequence of lipase, the peptides were analyzed by MALDI-TOF analysis. It was revealed that the lipase was site-selectively fragmented (<5 kDa) by IPL treatment. Furthermore, evidences for peptide bond cleavage was identified using Findpept® tool. From these findings, it is evident that the lipase deactivation was occurred quantitatively in molecular level.-
dc.description.tableofcontentsAbstract I
Contents III
List of tables VII
List of figures VIII

1. Introduction 1
2. Materials and Methods 5
2.1. Intense pulsed light (IPL) treatment system 5
2.1.1. IPL apparatus 5
2.1.2. Measurement of IPL energy density 7
2.1.3. IPL treatment on lipase 10
2.2. Lipase assay in reverse micelle system 10
2.2.1. Chemicals and reagents 10
2.2.2. Preparation of reverse micelles 11
2.2.3. Determination of lipase activity 12
2.3. Analysis of IPL-treated lipase activity 13
2.3.1. Deactivation of lipase 13
2.3.2. Two-step series type deactivation kinetics 13
2.3.3. Critical point for deactivation 14
2.4. Structural analysis of IPL-treated lipase 14
2.4.1. Circular dichroism (CD) 14
2.4.2. Fluorescence spectroscopy 15
2.5. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) 15
2.6. Matrix assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF) 16
2.7. FindPept® tool 17
3. Results and Discussion 19
3.1. Lipase deactivation by IPL treatment 19
3.1.1. Deactivation phenomenon of lipase 19
3.1.2. Deactivation rate constant determination 22
3.1.3. Effect of total input energy on lipase deactivation 26
3.2. Evaluation of critical point for deactivation 30
3.3. Structure modification by IPL treatment 33
3.3.1. Secondary structure analysis of lipase 33
3.3.2. Assessment of tertiary structural changes by IPL treatment 37
3.4. SDS-PAGE 41
3.5. MALDI-TOF 46
3.5.1. Fragmentation pattern analysis 46
3.5.2. Cleavage site estimation using FindPept® tool 49
4. References 57
국문초록 64
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dc.formatapplication/pdf-
dc.format.extent7387553 bytes-
dc.format.mediumapplication/pdf-
dc.language.isoen-
dc.publisher서울대학교 대학원-
dc.subjectChromobacterium viscosum lipase-
dc.subjectintense pulsed light-
dc.subjectdeactivation kinetics-
dc.subjectsite-selective fragmentation-
dc.subjectpeptide bond cleavage-
dc.subject.ddc630-
dc.titleEffect of intense pulsed light on the deactivation of lipase: enzyme-deactivation kinetics and tertiary structural changes by fragmentation-
dc.title.alternative광펄스가 라이페이스 활성 감소에 미치는 영향: 효소-불활성화 동역학적 해석 및 단편화에 의한 3차구조 변화-
dc.typeThesis-
dc.contributor.AlternativeAuthorJeon Min Sik-
dc.description.degreeMaster-
dc.citation.pagesXII, 65-
dc.contributor.affiliation농업생명과학대학 농생명공학부-
dc.date.awarded2015-08-
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