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Study on Muscle Differentiation in Quail Myoblast Cells Genome-Edited by CRISPR-Cas9 System : CRISPR-Cas9 시스템으로 유전자를 교정한 메추리의 근원세포에서의 근육 분화 연구

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dc.contributor.advisor박태섭-
dc.contributor.author김시원-
dc.date.accessioned2017-10-31T07:44:09Z-
dc.date.available2017-10-31T07:44:09Z-
dc.date.issued2017-08-
dc.identifier.other000000145321-
dc.identifier.urihttps://hdl.handle.net/10371/137483-
dc.description학위논문 (석사)-- 서울대학교 국제농업기술대학원 국제농업기술학과, 2017. 8. 박태섭.-
dc.description.abstractIn the livestock industry, the regulatory mechanisms of muscle proliferation and differentiation are very important to understand skeletal muscle growth. This study is about to investigate the regulatory pathway of MyoD and its role in muscle differentiation in QM7 (quail muscle clone 7) myoblast cells. The MyoD gene was mutated by the clustered regularly interspaced short palindromic repeat (CRISPR)/Cas9 technology and single cell-derived MyoD mutant sublines were identified to investigate the regulatory mechanism responsible for muscle differentiation. We induced the differentiation by changing medium without serum during cell culture. The mutation efficiency in the mixed population was 73.3%. We selected a single cell (MyoD KO QM7#4) from the mixed population and cultured to expansion. We confirmed the difference between on the 3, 6 day of differentiation. The expression of paired box 7 (Pax7), which is the undifferentiated marker, was not significantly different from regular QM7 (rQM7) cells to MyoD KO QM7#4 cells. However, there was a significant difference in morphology between the rQM7 cells and MyoD KO QM7#4 cells during differentiation. The differentiation to myotube formation and the nuclear fusion rate was glaringly suppressed in MyoD KO QM7#4 cells comparing with rQM7 cells. And the myogenic differentiation-related genes also were not detected in MyoD KO QM7#4 cells during differentiation. In conclusion, we can assume that MyoD is a critical factor for muscle differentiation in the quail myoblast and the CRISPR/Cas9-mediated genomic editing can be adapted to various aspects, not only for this study, but also for functional genomic study in the poultry science.

Keywords : myoblast, CRISPR-Cas9, knockout, muscle differentiation, MyoD
Student Number: 2015-22418
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dc.description.tableofcontents1. Introduction 1
1.1. Study about muscle growth 1
1.1.1. Importance of growth study in the industry 1
1.1.2. Myogenic regulation-related factors 1
1.2. Backgrounds of this experiment 2
1.2.1. Quail muscle clone 7 (QM7) cell 2
1.2.2. CRISPR/Cas9 system for genomic editing 3
1.2.3. String analysis 7
1.2.4. The hypothesis of this study with MyoD 8
2. Materials and Methods 9
2.1. Quail myoblast (QM7) cell culture and induction of myotube differentiation 9
2.2. CRISPR/Cas9-mediated MyoD knockout and fluorescence-activated cell sorting 9
2.3. Genotyping by T-vector cloning and sequencing 10
2.4. De novo assembly of RNA-sequencing data of quail transcripts 12
2.5. Statistical analysis 13
2.6. Reverse transcription PCR and quantitative reverse transcription-PCR 13
2.7. Western blotting 14
3. Results 15
3.1. CRISPR/Cas9-mediated MyoD knockout and establishment of single cell-derived subline. 15
3.1.1.MyoD gene knockout in QM7 cells. 15
3.1.2. Genotyping analysis of MyoD knockout QM7 cell line. 19
3.2. Characterization of MyoD knockout QM7 cell 21
3.2.1. Paired box 7 (Pax7) expression in rQM7 cells and MyoD KO QM7#4 cells. 21
3.2.2. Morphological comparison between undifferentiated rQM7 cells and MyoD KO QM7#4 cells. 23
3.2.3. Morphological comparison between differentiated rQM7 cells and MyoD KO QM7#4 cells. 24
3.2.4. Nuclear fusion of the rQM7 cells and MyoD KO QM7#4 cells. 26
3.2.5. Confirm the expression of myogenic differentiation-related genes in rQM7 cells and MyoD KO QM7#4 cells. 28
3.3. Global gene expression analysis by RNA sequencing in QM7 MyoD KO cells. 32
4. Discussion 37
5. Conclusion 41
6. Bibliography 42
7. Abstract in Korean 49
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dc.formatapplication/pdf-
dc.format.extent1154097 bytes-
dc.format.mediumapplication/pdf-
dc.language.isoen-
dc.publisher서울대학교 국제농업기술대학원-
dc.subjectmyoblast-
dc.subjectCRISPR-Cas9-
dc.subjectknockout-
dc.subjectmuscle differentiation-
dc.subjectMyoD-
dc.subject.ddc631-
dc.titleStudy on Muscle Differentiation in Quail Myoblast Cells Genome-Edited by CRISPR-Cas9 System-
dc.title.alternativeCRISPR-Cas9 시스템으로 유전자를 교정한 메추리의 근원세포에서의 근육 분화 연구-
dc.typeThesis-
dc.contributor.AlternativeAuthorSi Won Kim-
dc.description.degreeMaster-
dc.contributor.affiliation국제농업기술대학원 국제농업기술학과-
dc.date.awarded2017-08-
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