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HAC-NPR1-TGA 복합체에 의한 애기장대 면역의 후성유전학적 조절 : Epigenetic regulation of Arabidopsis immunity by the HAC-NPR1-TGA Complex

DC Field Value Language
dc.contributor.advisor노유선-
dc.contributor.author김홍실-
dc.date.accessioned2018-05-28T17:08:41Z-
dc.date.available2021-04-13T01:43:49Z-
dc.date.issued2018-02-
dc.identifier.other000000151082-
dc.identifier.urihttps://hdl.handle.net/10371/141116-
dc.description학위논문 (박사)-- 서울대학교 대학원 : 자연과학대학 생명과학부, 2018. 2. 노유선.-
dc.description.abstractUnlike animals, plants lack specialized immune cells. Instead, plants have developed multiple layers of sophisticated immune responses through massive expression of immune-related genes including the pathogenesis related (PR) genes to respond to bacterial or viral pathogenic attacks. Upon pathogenic attack, plants turn on the innate immune system as the first line of defense. The immune response is initiated at the site of infection by accumulating salicylic acid (SA). Then, as a major signaling molecule in plant immunity, SA is accumulated at distal tissues to protect the entire plant against successive attacks by various pathogen. This whole plant resistance response is referred as systemic acquired resistance (SAR). SA signal results in the activation of the master immune regulator, NPR1, which is recruited by TGACG SEQUENCE-SPECIFIC BINDING PROTEIN (TGA) transcription factors to numerous downstream PR genes. However, despite the critical role of NPR1 in SA-triggered immunity, the biochemical mechanism of NPR1 as a transcriptional co-activator remain largely unknown.
Epigenetics is the study of heritable changes in gene expression which are not based on changes in DNA sequence. Histone acetylation is an epigenetic modification that occurs at the lysine residue of N-terminal histone tail. Histone acetyltransferases (HATs) transfer the acetyl group (COCH3) from acetyl coenzyme A (acetyl-CoA) to the NH3+ amino group of histones. HATs are also known as transcription co-activators, leading to transcriptional activation.
In Arabidopsis, recent studies reported that CBP/p300 HAC family proteins possess histone acetyltransferase activities. The two types of zinc finger domains ZnF-TAZ and ZnF-ZZ in CBP/p300 families are known to be important for mediating protein–protein interactions. Epigenetic regulation through several HACs is known to play crucial roles in flowering, various developmental processes, and ethylene signaling pathway.
In this study, I showed that the CBP/p300-family histone acetyltransferases, HAC1 and HAC5 (HAC1/5) are required for SA-triggered immunity and PR induction in Arabidopsis. During SA-triggered immune response, HAC1 form a complex with NPR1 and TGAs to activate PR genes by histone acetylation. Thus, this study reveals the function of HAC1 as a co-activator of NPR1 and the precise biochemical mechanism of NPR1-mediated transcriptional activation. Furthermore, this study also proposes epigenetic reprogramming acts as an essential part of plant immune system which allows plants to efficiently switch their regular developmental program to a defense program upon pathogenic attack.
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dc.description.tableofcontents1. General Introduction 1
1.1 Epigenetic control and gene expression 1
1.1.1 Histone modification 1
1.1.1.1 Histone acetylation 4
1.1.1.2 Histone deacetylation 7
1.1.2 DNA methylation 10
1.1.3 ATP-dependent chromatin remodeling 12
1.1.4 Noncoding RNA-mediated silencing 13
1.2 The plant immune system 14
1.2.1 The innate immune system of plant 15
1.2.2 PAMP-triggered immunity in Arabidopsis 16
1.2.3 Systemic acquired resistance (SAR) and salicylic acid (SA) signaling 16
1.2.4 NON-EXPRESSER OF PR GENES1 (NPR1) 18
1.2.5 PATHOGENESIS-RELATED (PR) GENES 21
1.2.6 TGA transcription factors 22
1.2.7 SA-JA-ET crosstalk in plant immune response 23
1.2.8 Epigenetic control of the SA-dependent defense 25
2. Epigenetic reprogramming by the HAC-NPR1-TGA complex confers immunity in Arabidopsis 30
2.1 Materials and methods 31
2.1.1 Plant materials and growth conditions 31
2.1.2 Pathogen infection 31
2.1.3 Plasmid construction 31
2.1.4 Protein purification and immunoblotting 32
2.1.5 Co-IP assay 33
2.1.6 Yeast-Two-Hybrid assay 33
2.1.7 Gel filtration assay 34
2.1.8 RNA extraction and RT-qPCR analysis 35
2.1.9 ChIP assay 35
2.1.10 RNA sequencing analysis 35
2.1.11 ChIP sequencing analysis 36
2.1.12 Sequential ChIP assay 36
2.1.13 Confocal Microscopy 37
2.2 Text 51
2.2.1 The H3Ac increase at PR1 is undermined by the loss of either NPR1 or the three related Class II TGAs 52
2.2.2 HACs activate SA-dependent plant immunity by promoting PR transcription through histone acetylation 53
2.2.3 HAC1, NPR1, and TGA2 form a complex in Arabidopsis 53
2.2.4 HAC1 and TGA2/5 do not interact directly but indirectly through NPR1 55
2.2.5 HAC1, NPR1, and TGA2/5 may form a multi-protein complex 56
2.2.6 HAC-NPR1-TGA complex constitutes part of the genome-wide transcriptional activator system acting in plant immunity 58
2.3 Figures 59
References 91
Abstract in Korean 109
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dc.formatapplication/pdf-
dc.format.extent3757718 bytes-
dc.format.mediumapplication/pdf-
dc.language.isoko-
dc.publisher서울대학교 대학원-
dc.subjectCBP/p300-
dc.subjectHistone acetyltransferase-
dc.subjectHAC1-
dc.subjectNPR1-
dc.subjectSA-
dc.subjectImmune system-
dc.subjectPathogen.-
dc.subject.ddc570-
dc.titleHAC-NPR1-TGA 복합체에 의한 애기장대 면역의 후성유전학적 조절-
dc.title.alternativeEpigenetic regulation of Arabidopsis immunity by the HAC-NPR1-TGA Complex-
dc.typeThesis-
dc.contributor.AlternativeAuthorHongshi Jin-
dc.description.degreeDoctor-
dc.contributor.affiliation자연과학대학 생명과학부-
dc.date.awarded2018-02-
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