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Ginseng Genome Database: an open-access platform for genomics of Panax ginseng

DC Field Value Language
dc.contributor.authorJayakodi, Murukarthick-
dc.contributor.authorChoi, Beom-Soon-
dc.contributor.authorLee, Sang-Choon-
dc.contributor.authorKim, Nam-Hoon-
dc.contributor.authorPark, Jee Young-
dc.contributor.authorJang, Woojong-
dc.contributor.authorLakshmanan, Meiyappan-
dc.contributor.authorMohan, Shobhana V G-
dc.contributor.authorLee, Dong-Yup-
dc.contributor.authorYang, Tae-Jin-
dc.date.accessioned2018-05-29T00:15:10Z-
dc.date.available2018-05-29T09:16:58Z-
dc.date.issued2018-04-12-
dc.identifier.citationBMC Plant Biology, 18(1):62ko_KR
dc.identifier.issn1471-2229-
dc.identifier.urihttps://hdl.handle.net/10371/141236-
dc.description.abstractBackground
The ginseng (Panax ginseng C.A. Meyer) is a perennial herbaceous plant that has been used in traditional oriental medicine for thousands of years. Ginsenosides, which have significant pharmacological effects on human health, are the foremost bioactive constituents in this plant. Having realized the importance of this plant to humans, an integrated omics resource becomes indispensable to facilitate genomic research, molecular breeding and pharmacological study of this herb.

Description
The first draft genome sequences of P. ginseng cultivar Chunpoong were reported recently. Here, using the draft genome, transcriptome, and functional annotation datasets of P. ginseng, we have constructed the Ginseng Genome Database http://ginsengdb.snu.ac.kr/, the first open-access platform to provide comprehensive genomic resources of P. ginseng. The current version of this database provides the most up-to-date draft genome sequence (of approximately 3000 Mbp of scaffold sequences) along with the structural and functional annotations for 59,352 genes and digital expression of genes based on transcriptome data from different tissues, growth stages and treatments. In addition, tools for visualization and the genomic data from various analyses are provided. All data in the database were manually curated and integrated within a user-friendly query page.

Conclusion
This database provides valuable resources for a range of research fields related to P. ginseng and other species belonging to the Apiales order as well as for plant research communities in general. Ginseng genome database can be accessed at http://ginsengdb.snu.ac.kr/.
ko_KR
dc.description.sponsorshipThis study was supported by a grant from the Next-Generation BioGreen21 Program (PJ01311901, PJ01334605), Rural Development Administration, Republic of Korea and Synthetic Biology Initiative of the National University of Singapore (DPRT/943/09/14).ko_KR
dc.language.isoenko_KR
dc.publisherBioMed Centralko_KR
dc.subjectPanax ginsengko_KR
dc.subjectGenome databaseko_KR
dc.subjectGinseng annotationko_KR
dc.subjectGinseng genome browserko_KR
dc.titleGinseng Genome Database: an open-access platform for genomics of Panax ginsengko_KR
dc.typeArticleko_KR
dc.contributor.AlternativeAuthor최범순-
dc.contributor.AlternativeAuthor이상춘-
dc.contributor.AlternativeAuthor김남훈-
dc.contributor.AlternativeAuthor박지영-
dc.contributor.AlternativeAuthor장우종-
dc.contributor.AlternativeAuthor이동엽-
dc.contributor.AlternativeAuthor양태진-
dc.identifier.doi10.1186/s12870-018-1282-9-
dc.language.rfc3066en-
dc.rights.holderThe Author(s).-
dc.date.updated2018-04-15T03:24:14Z-
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