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In-vivo Sap Flow Measurement System Using Microneedle Sensor : 미세 바늘 센서를 이용한 생체 내 수액 흐름 측정 시스템

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dc.contributor.advisor이정훈-
dc.contributor.author백상웅-
dc.date.accessioned2018-11-12T00:57:54Z-
dc.date.available2018-11-12T00:57:54Z-
dc.date.issued2018-08-
dc.identifier.other000000152513-
dc.identifier.urihttps://hdl.handle.net/10371/143171-
dc.description학위논문 (박사)-- 서울대학교 대학원 : 공과대학 기계항공공학부, 2018. 8. 이정훈.-
dc.description.abstractMeasurement of xylem sap flow is essential in understanding plant physiology in agriculture. Advanced hydroponics, for instance, require sap flow measurement to observe the plant reaction to environmental variables such as sunlight, humidity, and soil water content. However, most conventional approaches for sap flow measurement have been limited to large woody plants. Plants grown in hydroponics, e.g., tomatoes and bell peppers, are smaller and softer, and thus can hardly survive the invasion of thick thermal probes for flow speed measurement. A microneedle thermal probe system that can be implanted into a small plant was developed for the measurement of sap flow through the xylem. The microneedle sap flow sensor and its measurement method were presented. The thermal property of microneedle probe was studied with analytical model and multiphysics simulation. The microneedle sap flow sensor was fabricated with MEMS fabrication process. The measurement system including electronics and data acquisition setup was prepared. The calibration of the sensor was conducted for xylem flow. Tests with a tomato stem resulted in a universal calibration model that can be applied to the same species. The sensors were installed to greenhouse plants to measure the in-vivo signal for total of 612 days. More than 207 sensors were installed and sap flow and internal relative temperature were measured in field. We demonstrate routine measurements of sap flow in greenhouse plants including tomato plant over a month, opening up the possibility for production scale application. A microscale hot wire on a single probe benefits from small-scale physics with a simple configuration. The single probe enables minimally invasive measurement with a minimal thermal impact on plant tissues.-
dc.description.tableofcontentsAbstract i

Table of Contents iii

List of Figures ix

List of Tables xviii



Chapter 1. General Introduction 1

1.1. Background of research 1

1.1.1. Importance of measuring biometric information

in greenhouse cultivation 1

1.1.2. Importance of sap flow as biometric information 2

1.1.3. Thermometric sap flow measurement methods 4

1.1.4. Demand for minimally invasive measurements 9

1.1.5. MEMS implantable microneedle sensors 9

1.1.6. Benefits of microscale needle probe

in thermal characteristic aspects 10

1.2. Research objective 11

Bibliography 12



Chapter 2. Methods, Design and Fabrication 17

2.1. Design of microneedle sap flow sensor probe 17

2.1.1. Sap flow measurement with heat dissipation method 17

2.1.2. Sap flow measurement method with a single thermal probe 18

2.1.3. Determination of TM 20

2.1.4. Thermal design of mocroneedle probe 23

2.1.5. Structural design of microneedle probe 24

2.1.6. Target performance of the sensor 25

2.2. Fabrication of microneedle sap flow sensor 27

2.2.1. Fabrication process of microneedle sensor 27

2.2.2. Packaging of the sensor 29

2.3. Measurement circuit design and fabrication 31

2.3.1. Design of measurement circuit 31

2.3.2. Fabrication of the measurement circuit 32

2.3.3. Evaluatoin of measurement system. 33

2.4. Design for electrical breakdown preventation 36

2.4.1. What is electrical breakdown 36

2.4.2. Analysis of electrical breakdown phenomena 36

2.4.3. Elelctrode patterning process to minimize

electrical breakdown 38

2.4.4. Composite dielectric layer process to minimize

electrical breakdown 41

2.4.5. Negative voltage driving to minimize electrical breakdown 42

2.5. Configuration of complete measurement system 44

2.6. Performance specification of the measurement system 45

2.7. Conclusion 46

Bibliography 47



Chapter 3. Theory and Analysis 51

3.1. Thermal analysis of microneedle probe 51

3.1.1. Theoretical background and assumptions 51

3.1.2. Energy equation for conjugated heat transfer in porous media 52

3.1.3. Lumped capacitance method 53

3.1.4. Comparison between convective heat transfer versus

conduction heat transfer in conjugatd heat transfer. 54

3.1.5. Single component lumped capacitance model,

transient state response 57

3.1.6. Steady state response of single component

lumped capacitance model 59

3.1.7. Multi component lumped capacitance model 61

3.2. Simulation analysis of microneedle probe 64

3.2.1. Simulation method 64

3.2.2. Transition heat transfer simulation 65

3.2.3. Steady-state heat transfer simulation 67

3.3. Conclusion 70

Bibliography 71



Chapter 4. Thermal Characterization and Calibration 73

4.1. Analysis of thermal characteristics by heating power 73

4.1.1. Basic thermal property of microneedle probe 73

4.1.2. Heating power of microneedle probe 74

4.1.3. Analysis of the experimental result with

lumped capacitance model 76

4.2. Thermal characterization and calibration of microneedle 80

4.2.1. Calibration of microneedle probe 80

4.2.2. Pipe flow: calibration method 80

4.2.3. Pipe flow: thermal characterization 81

4.2.4. Pipe flow: calibration result 84

4.2.5. Xylem flow: calibration method 88

4.2.6. Xylem flow: thermal characterization 90

4.2.7. Xylem flow: calibration result 92

4.2.8. Comparison between calibration for pipe and

calibration for xylem flow 95

4.3. Conclusion 96

Bibliography 97



Chapter 5. In-Vivo Measurement of Microneedle Sap Flow Sensor 99

5.1. Measurement of sap flow by artificial light 99

5.1.1. Artificial light experiment method 99

5.1.2. Result of artificial light experiment 100

5.1.3. Conclusion of artificial light experiment 102

5.2. In-vivo measurement of tomato plant 104

5.2.1. Field measurement method for tomato plant 104

5.2.2. Long-term measurement of tomato plant in greenhouse 106

5.2.3. Result of long-term measurement of tomato plant

in greenhouse. 106

5.2.4. Comparison between environmental variables

and sap flow 111

5.2.5. Result of comparison between environment variables

and sap flow 111

5.2.6. Irrigation cut test 117

5.2.7. Result of irrigation cut test 118

5.2.8. Mass population measurement of sap flow signal 121

5.2.9. Statistical use of sap flow signal 122

5.2.10. Pedicel / peduncle sap flow measurement 127

5.2.11. Result of pedicel / peduncle measurement 128

5.2.12. Conclusion of in-vivo measurement of tomato plant 130

5.3. In-vivo measurement of other plants 131

5.3.1. Measurement methods 131

5.3.2. In-vivo measurement of paprika 131

5.3.3. In-vivo measurement of cucumber 132

5.3.4. In-vivo measurment of clusia 133

5.3.5. In-vivo measurement of rubber tree 136

5.4. Microneedle implantation effect 138

5.5. Conclusion 141

Bibliography 142



Chapter 6. Compensation of Natural Temperature Gradient 143

6.1. Introduction to natural temperature gradient (NTG) 143

6.1.1. What is NTG 143

6.1.2. Effect of NTG in sap flow measurement 143

6.2. Compensation of NTG 145

6.2.1. Compensation method for NTG 145

6.2.2. NTG compensaion result 148

6.3. Conclusion 152

Bibliography 153



Chapter 7. Array Sensor Measurement 155

7.1. Introduction 155

7.1.1. Measurement of sap flow distribution 155

7.2. Design and fabrication 157

7.2.1. Sensor design 157

7.2.2. Sensor fabrication 159

7.3. Test and calibration 161

7.3.1. Operation power test 161

7.3.2. Calibration 166

7.4. Field application of array measurement sensor 172

7.4.1. Field measurement method of array sensor 172

7.4.2. Field measurement result of array measure sensor 172

7.5. Concluison 176

Bibliography 177



Chapter 8. Conclusion 179

Appendix 183

A. Circuit diagram of measurement circuit. 183

B. Matlab code for sap flow conversion 184

C. Processing code for data acquisition 188

D. Arduino code for measurement 193



국문 초록 197
-
dc.language.isoen-
dc.publisher서울대학교 대학원-
dc.subject.ddc621-
dc.titleIn-vivo Sap Flow Measurement System Using Microneedle Sensor-
dc.title.alternative미세 바늘 센서를 이용한 생체 내 수액 흐름 측정 시스템-
dc.typeThesis-
dc.description.degreeDoctor-
dc.contributor.affiliation공과대학 기계항공공학부-
dc.date.awarded2018-08-
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