Publications

Detailed Information

rRNASelector: A computer program for selecting ribosomal RNA encoding sequences from metagenomic and metatranscriptomic shotgun libraries

DC Field Value Language
dc.contributor.authorLee, Jae-Hak-
dc.contributor.authorYi, Hana-
dc.contributor.authorChun, Jongsik-
dc.date.accessioned2020-04-27T13:28:49Z-
dc.date.available2020-04-27T13:28:49Z-
dc.date.created2020-02-19-
dc.date.issued2011-08-
dc.identifier.citationThe Journal of Microbiology, Vol.49 No.4, pp.689-691-
dc.identifier.issn1225-8873-
dc.identifier.other91784-
dc.identifier.urihttps://hdl.handle.net/10371/165902-
dc.description.abstractMetagenomic and metatranscriptomic shotgun sequencing techniques are gaining popularity as more cost-effective next-generation sequencing technologies become commercially available. The initial stage of bioinformatic analysis generally involves the identification of phylogenetic markers such as ribosomal RNA genes. The sequencing reads that do not code for rRNA can then be used for protein-based analysis. Hidden Markov model is a well-known method for pattern recognition. Hidden Markov models that are trained on well-curated rRNA sequence databases have been successfully used to identify DNA sequence coding for rRNAs in prokaryotes. Here, we introduce rRNASelector, which is a computer program for selecting rRNA genes from massive metagenomic and metatranscriptomic sequences using hidden Markov models. The program successfully identified prokaryotic 5S, 26S, and 23S rRNA genes from Roche 454 FLX Titanium-based metagenomic and metatranscriptomic libraries. The rRNASelector program is available at http://sw.ezbiocloud.net/rrnaselector.-
dc.language영어-
dc.publisher한국미생물학회-
dc.titlerRNASelector: A computer program for selecting ribosomal RNA encoding sequences from metagenomic and metatranscriptomic shotgun libraries-
dc.typeArticle-
dc.contributor.AlternativeAuthor천종식-
dc.identifier.doi10.1007/s12275-011-1213-z-
dc.citation.journaltitleThe Journal of Microbiology-
dc.identifier.wosid000294443100025-
dc.identifier.scopusid2-s2.0-80052290460-
dc.citation.endpage691-
dc.citation.number4-
dc.citation.startpage689-
dc.citation.volume49-
dc.identifier.sci000294443100025-
dc.identifier.kciidART001579608-
dc.description.isOpenAccessN-
dc.contributor.affiliatedAuthorChun, Jongsik-
dc.type.docTypeArticle-
dc.description.journalClass1-
dc.subject.keywordPlusUNCULTURED MICROORGANISMS-
dc.subject.keywordPlusIDENTIFICATION-
dc.subject.keywordPlusDIVERSITY-
dc.subject.keywordPlusCLONING-
dc.subject.keywordPlusGENES-
dc.subject.keywordPlusPCR-
dc.subject.keywordAuthorrRNASelector-
dc.subject.keywordAuthormetagenomics-
dc.subject.keywordAuthormetatranscriptomics-
dc.subject.keywordAuthorHMMER-
dc.subject.keywordAuthorrRNA-
dc.subject.keywordAuthorcomputer program-
Appears in Collections:
Files in This Item:
There are no files associated with this item.

Altmetrics

Item View & Download Count

  • mendeley

Items in S-Space are protected by copyright, with all rights reserved, unless otherwise indicated.

Share