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jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences
Cited 168 time in
Web of Science
Cited 176 time in Scopus
- Authors
- Issue Date
- 2005-07
- Publisher
- Oxford University Press
- Citation
- Bioinformatics, Vol.21 No.14, pp.3171-3173
- Abstract
- jPHYDIT is a Java application designed to furnish a visual and integrated environment for molecular phylogeny. The program can be used to visualize intra-strand base-pairing information in secondary and tertiary structures of ribosomal RNA ( rRNA) sequences. A function for the semi-automated alignment was included to facilitate handling of the database containing a large number of multiple-aligned rRNA sequences. Integration of nucleotide sequence editing, pair-wise alignment, multiple alignment and phylogenetic treeing functions provide an easy and efficient way of analyzing rRNA sequences for molecular evolution, systematics, epidemiology and ecology.
- ISSN
- 1367-4803
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