Publications
Detailed Information
Sequence-based genotyping methods to assess the genetic diversity of Riemerella anatipestifer isolates from ducklings with tremor
DC Field | Value | Language |
---|---|---|
dc.contributor.author | Han, Jee Eun | - |
dc.contributor.author | Kim, Ji Hyung | - |
dc.contributor.author | Choresca Jr., Casiano | - |
dc.contributor.author | Shin, Sang Phil | - |
dc.contributor.author | Jun, Jin Woo | - |
dc.contributor.author | Park, Se Chang | - |
dc.creator | 박세창 | - |
dc.date.accessioned | 2013-11-05T08:30:40Z | - |
dc.date.available | 2013-11-05T08:30:40Z | - |
dc.date.issued | 2013-10 | - |
dc.identifier.citation | New Microbiologica Vol.36 No.4, pp. 395-404 | - |
dc.identifier.issn | 1121-7138 | - |
dc.identifier.uri | https://hdl.handle.net/10371/84055 | - |
dc.description.abstract | The aim of this study was to investigate sequence-based genotyping methods to distinguish 27 Riemerella anatipestifer isolates from ducklings in South Korea. The 16S rRNA sequences of the 27 R. anatipestifer isolates showed 99-100% similarities to each other and to reference sequences from Genbank (AY871822.2, AY871834.2, CP002562.1, EU715016.1, EU016548.1, EU715000.1, EU715008.1 and EU715011.1). In addition, the ompA gene sequences of 25 of the 27 R. anatipestifer isolates were 100% identical to each other, and these sequences were also 100% identical to reference sequences (CP002562.1, GQ415419.1, DQ059079, FJ765034.1, AY606207.1, AF104937.1, and FJ765033.1). Alternatively, four housekeeping genes (mdh, gdh, pgi, and rpoB) and three virulence-associated genes (prtC, hagA, and sspA) were used for a multi-locus sequence typing (MLST) and a single-locus sequence typing (SLST) among R. anatipestifer isolates. Compared to 16S rRNA and the ompA gene, seven genes showed higher genetic divergence patterns, and the isolates were separated into three distinct groups in phylogenetic trees. | - |
dc.description.sponsorship | This study was financially supported by a Korean Research Foundation Grant (KRF-2008-331-E00385). | - |
dc.language.iso | en | en |
dc.publisher | Patronage of the Italian National Research Council (C.N.R.) and the Universities of Bologna and Pavia - Italy | en |
dc.subject | 복합학 | en |
dc.subject | Housekeeping genes | - |
dc.subject | MLST | - |
dc.subject | Phylogenetic analysis | - |
dc.subject | Riemerella anatipestifer | - |
dc.subject | SLST | - |
dc.subject | Virulence-associated genes | - |
dc.title | Sequence-based genotyping methods to assess the genetic diversity of Riemerella anatipestifer isolates from ducklings with tremor | en |
dc.type | Article | - |
dc.author.alternative | 한지은 | - |
dc.author.alternative | 김지형 | - |
dc.author.alternative | 신상필 | - |
dc.author.alternative | 전진우 | - |
dc.author.alternative | 박세창 | - |
dc.citation.journaltitle | New Microbiologica | - |
dc.description.srnd | OAIID:oai:osos.snu.ac.kr:snu2013-01/102/0000030777/11 | - |
dc.description.srnd | SEQ:11 | - |
dc.description.srnd | PERF_CD:SNU2013-01 | - |
dc.description.srnd | EVAL_ITEM_CD:102 | - |
dc.description.srnd | USER_ID:0000030777 | - |
dc.description.srnd | ADJUST_YN:N | - |
dc.description.srnd | EMP_ID:A076079 | - |
dc.description.srnd | DEPT_CD:551 | - |
dc.description.srnd | CITE_RATE:1.667 | - |
dc.description.srnd | FILENAME:micro4_08_han.pdf | - |
dc.description.srnd | DEPT_NM:수의학과 | - |
dc.description.srnd | EMAIL:parksec@snu.ac.kr | - |
dc.description.srnd | SCOPUS_YN:Y | - |
dc.description.srnd | CONFIRM:Y | - |
dc.identifier.srnd | 2013-01/102/0000030777/11 | - |
- Appears in Collections:
- Files in This Item:
Item View & Download Count
Items in S-Space are protected by copyright, with all rights reserved, unless otherwise indicated.