Browse

Sequence-based genotyping methods to assess the genetic diversity of Riemerella anatipestifer isolates from ducklings with tremor

DC Field Value Language
dc.contributor.authorHan, Jee Eun-
dc.contributor.authorKim, Ji Hyung-
dc.contributor.authorChoresca Jr., Casiano-
dc.contributor.authorShin, Sang Phil-
dc.contributor.authorJun, Jin Woo-
dc.contributor.authorPark, Se Chang-
dc.creator박세창-
dc.date.accessioned2013-11-05T08:30:40Z-
dc.date.available2013-11-05T08:30:40Z-
dc.date.issued2013-10-
dc.identifier.citationNew Microbiologica Vol.36 No.4, pp. 395-404-
dc.identifier.issn1121-7138-
dc.identifier.urihttps://hdl.handle.net/10371/84055-
dc.description.abstractThe aim of this study was to investigate sequence-based genotyping methods to distinguish 27 Riemerella anatipestifer isolates from ducklings in South Korea. The 16S rRNA sequences of the 27 R. anatipestifer isolates showed 99-100% similarities to each other and to reference sequences from Genbank (AY871822.2, AY871834.2, CP002562.1, EU715016.1, EU016548.1, EU715000.1, EU715008.1 and EU715011.1). In addition, the ompA gene sequences of 25 of the 27 R. anatipestifer isolates were 100% identical to each other, and these sequences were also 100% identical to reference sequences (CP002562.1, GQ415419.1, DQ059079, FJ765034.1, AY606207.1, AF104937.1, and FJ765033.1). Alternatively, four housekeeping genes (mdh, gdh, pgi, and rpoB) and three virulence-associated genes (prtC, hagA, and sspA) were used for a multi-locus sequence typing (MLST) and a single-locus sequence typing (SLST) among R. anatipestifer isolates. Compared to 16S rRNA and the ompA gene, seven genes showed higher genetic divergence patterns, and the isolates were separated into three distinct groups in phylogenetic trees.-
dc.description.sponsorshipThis study was financially supported by a Korean Research Foundation Grant (KRF-2008-331-E00385).-
dc.language.isoenen
dc.publisherPatronage of the Italian National Research Council (C.N.R.) and the Universities of Bologna and Pavia - Italyen
dc.subject복합학en
dc.subjectHousekeeping genes-
dc.subjectMLST-
dc.subjectPhylogenetic analysis-
dc.subjectRiemerella anatipestifer-
dc.subjectSLST-
dc.subjectVirulence-associated genes-
dc.titleSequence-based genotyping methods to assess the genetic diversity of Riemerella anatipestifer isolates from ducklings with tremoren
dc.typeArticle-
dc.author.alternative한지은-
dc.author.alternative김지형-
dc.author.alternative신상필-
dc.author.alternative전진우-
dc.author.alternative박세창-
dc.citation.journaltitleNew Microbiologica-
dc.description.srndOAIID:oai:osos.snu.ac.kr:snu2013-01/102/0000030777/11-
dc.description.srndSEQ:11-
dc.description.srndPERF_CD:SNU2013-01-
dc.description.srndEVAL_ITEM_CD:102-
dc.description.srndUSER_ID:0000030777-
dc.description.srndADJUST_YN:N-
dc.description.srndEMP_ID:A076079-
dc.description.srndDEPT_CD:551-
dc.description.srndCITE_RATE:1.667-
dc.description.srndFILENAME:micro4_08_han.pdf-
dc.description.srndDEPT_NM:수의학과-
dc.description.srndEMAIL:parksec@snu.ac.kr-
dc.description.srndSCOPUS_YN:Y-
dc.description.srndCONFIRM:Y-
dc.identifier.srnd2013-01/102/0000030777/11-
Appears in Collections:
College of Veterinary Medicine (수의과대학)Dept. of Veterinary Medicine (수의학과)Journal Papers (저널논문_수의학과)
Files in This Item:
  • mendeley

Items in S-Space are protected by copyright, with all rights reserved, unless otherwise indicated.

Browse