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Issue Date	Title / Author(s) / Citation	File	Altmetrics
2016-05	MMseqs software suite for fast and deep clustering and searching of large protein sequence sets Hauser, Maria; Steinegger, Martin; Soeding, Johannes Bioinformatics, Vol.32 No.9, pp.1323-1330	DOI
2017-01	Uniclust databases of clustered and deeply annotated protein sequences and alignments Mirdita, Milot; von den Driesch, Lars; Galiez, Clovis; Martin, Maria J.; Soeding, Johannes; Steinegger, Martin Nucleic Acids Research, Vol.45 No.D1, pp.D170-D176	DOI
2017-11	MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets Steinegger, Martin; Soeding, Johannes Nature Biotechnology, Vol.35 No.11, pp.1026-1028	DOI
2018-06	Clustering huge protein sequence sets in linear time Steinegger, Martin; Soeding, Johannes Nature Communications, Vol.9 No.1, p. 2542	DOI
2019-07	Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold Steinegger, Martin; Mirdita, Milot; Soeding, Johannes Nature Methods, Vol.16 No.7, pp.603-609	DOI
2019-08	MMseqs2 desktop and local web server app for fast, interactive sequence searches Mirdita, Milot; Steinegger, Martin; Soeding, Johannes Bioinformatics, Vol.35 No.16, pp.2856-2858	DOI
2019-09	HH-suite3 for fast remote homology detection and deep protein annotation Steinegger, Martin; Meier, Markus; Mirdita, Milot; Voehringer, Harald; Haunsberger, Stephan J.; Soeding, Johannes BMC Bioinformatics, Vol.20 No.1, p. 473	DOI
2021-12	MMseqs2 profile/profile: fast and ultra-sensitive searches beyond the twilight zone Mirdita, Milot; Ji, Hyunjoo; Karin, Eli Levy; Sommer, Hans-Georg; Galiez, Clovis; Soeding, Johannes; Steinegger, Martin BMC BIOINFORMATICS, Vol.22 No.SUPPL 16
2023-11	DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options Basu, Sushmita; Zhao, Bi; Biro, Balint; Faraggi, Eshel; Gsponer, Jorg; Hu, Gang; Kloczkowski, Andrzej; Malhis, Nawar; Mirdita, Milot; Soeding, Johannes; Steinegger, Martin; Wang, Duolin; Wang, Kui; Xu, Dong; Zhang, Jian; Kurgan, Lukasz Nucleic Acids Research, Vol.52 No.D1, pp.D426-D433	DOI
2024-02	Fast and accurate protein structure search with Foldseek van Kempen, Michel; Kim, Stephanie S.; Tumescheit, Charlotte; Mirdita, Milot; Lee, Jeongjae; Gilchrist, Cameron L. M.; Soeding, Johannes; Steinegger, Martin Nature Biotechnology, Vol.42 No.2, pp.243-246	DOI

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