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PhyloCSF plus plus : a fast and user-friendly implementation of PhyloCSF with annotation tools : PhyloCSF++: A fast and user-friendly implementation of PhyloCSF with annotation tools
Cited 7 time in
Web of Science
Cited 5 time in Scopus
- Authors
- Issue Date
- 2022-02
- Publisher
- Oxford University Press
- Citation
- Bioinformatics, Vol.38 No.5, pp.1440-1442
- Abstract
- PhyloCSF++ is an efficient and parallelized C++ implementation of the popular PhyIoCSF method to distinguish protein-coding and non-coding regions in a genome based on multiple sequence alignments (MSAs). It can score alignments or produce browser tracks for entire genomes in the wig file format. Additionally, PhyloCSF++ annotates coding sequences in GFF/GTF files using precomputed tracks or computes and scores MSAs on the fly with MMseqs2.
- ISSN
- 1367-4803
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Related Researcher
- College of Natural Sciences
- School of Biological Sciences
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