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Complete Genome Sequence of Lactic Acid Bacterium Pediococcus acidilactici Strain ATCC 8042, an Autolytic Anti-bacterial Peptidoglycan Hydrolase Producer

Cited 4 time in Web of Science Cited 4 time in Scopus
Authors

Cho, Sung Won; Yang, Jina; Park, Sungwoo; Kim, Beomhee; Seo, Sang Woo

Issue Date
2019-06
Publisher
한국생물공학회
Citation
Biotechnology and Bioprocess Engineering, Vol.24 No.3, pp.483-487
Abstract
Pediococcus acidilactici is a probiotic bacterium that is industrially utilized in the food industry and antibiotics development. Here, we determine the complete nucleotide sequence of the genome of Pediococcus acidilactici ATCC 8042. The genome was sequenced by the PacBio RSII to generate a single contig consisting of circular chromosome sequence. Illumina MiniSeq sequencing platform and Sanger sequencing method were additionally utilized to correct errors resulting from the long-read sequencing platform. The sequence consists of 2,009,598 bp with a G + C content of 42.1% and contains 1,865 protein-coding sequences. Based on the sequence information, we could confirm and predict the presence of four peptidoglycan hydrolases by HyPe software. This work, therefore, provides the complete genomic information of P. acidilactici ATCC 8042 with a profitable potential of genome-scale comprehension of anti-pathogenic activity, which can be applied in nutraceutical and pharmaceutical biotechnology field.
ISSN
1226-8372
URI
https://hdl.handle.net/10371/203789
DOI
https://doi.org/10.1007/s12257-019-0037-2
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