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Transcriptome analysis of hepatitis B virus-associated small hepatocellular carcinoma by serial analysis of gene expression

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Authors
Kim, Jin-Wook; Lee, Sang Hyub; Park, Young Soo; Jeong, Sook-Hyang; Lee, Dong Ho; Lee, Hyo-Suk; Kim, Nayoung
Issue Date
2009-07
Publisher
SPANDIDOS PUBL LTD
Citation
INTERNATIONAL JOURNAL OF ONCOLOGY; Vol.35 1; 129-137
Keywords
hepatitis B virushepatocellular carcinomaserial analysis of gene expressiontranscriptome
Abstract
Serial analysis of gene expression (SAGE) is a sequence-based tool that enables quantitative study of comprehensive gene expression profiles. In this Study, we generated a SAGE library of hepatitis B virus (HBV)associated small hepatocellular carcinoma (HCC) and compared it with libraries of normal liver and other organs in order to identify genes which are specifically expressed in HBV-associated small HCC. A total of 18,107 SAGE tags were obtained from the HCC SAGE library. Among the 7,405 unique tags, 240 were significantly overexpressed in HCC compared to normal liver. Seventeen genes were unequivocally matched to SAGE tags which were up-regulated 15-fold or higher in HCC compared to normal liver: four genes (fatty acid desaturase 2, alpha-L-2-fucosidase, testis-specific protein Y-encoded-like 2 and Gon-4-like) were significantly overexpressed in the HCC SAGE library compared to any other SAGE libraries of human normal tissues. The significance of these genes with respect to carcinogenesis and early diagnosis of HCC needs to be elucidated in further studies.
ISSN
1019-6439
Language
English
URI
https://hdl.handle.net/10371/77413
DOI
https://doi.org/10.3892/ijo_00000321
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College of Medicine/School of Medicine (의과대학/대학원)Internal Medicine (내과학전공)Journal Papers (저널논문_내과학전공)
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