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Showing results 1 to 42 of 42

Issue Date	Title / Author(s) / Citation	File
2015-05	Graph pyramids for protein function prediction Sandhan, Tushar; Yoo, Youngjun; Choi, Jin Young; Kim, Sun BMC Medical Genomics, 8(Suppl 2):S12	view file DOI
2015-05	Combined analysis of gene regulatory network and SNV information enhances identification of potential gene markers in mouse knockout studies with small number of samples Hur, Benjamin; Chae, Heejoon; Kim, Sun BMC Medical Genomics, 8(Suppl 2):S10	view file DOI
2016-01	RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data Kim, Min-su; Hur, Benjamin; Kim, Sun BMC Genomics, 17(Suppl 1):5	view file DOI
2016-02	의약품 생산·공급 체제의 공공성(publicness) 분석 김선	view file
2016-03	MONGKIE: an integrated tool for network analysis and visualization for multi-omics data Jang, Yeongjun; Yu, Namhee; Seo, Jihae; Kim, Sun; Lee, Sanghyuk Biology Direct, 11(1):10	view file
2016-08	Integrated analysis of omics data using microRNA-target mRNA network and PPI network reveals regulation of Gnai1 function in the spinal cord of Ews/Ewsr1 KO mice Lee, Chai-Jin; Ahn, Hongryul; Lee, Sean Bong; Shin, Jong-Yeon; Park, Woong-Yang; Kim, Jong-Il; Lee, Junghee; Ryu, Hoon; Kim, Sun BMC Medical Genomics, 9(Suppl 1):33	view file DOI
2016-10	CLIP-GENE: a web service of the condition specific context-laid integrative analysis for gene prioritization in mouse TF knockout experiments Hur, Benjamin; Lim, Sangsoo; Chae, Heejoon; Seo, Seokjun; Lee, Sunwon; Kang, Jaewoo; Kim, Sun Biology Direct, 11(1):57	view file
2016-12	Subtype-specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines Chae, Heejoon; Lee, Sangseon; Nephew, Kenneth P; Kim, Sun BMC Systems Biology, 10(Suppl 4):116	view file
2016-12	Clustering and evolutionary analysis of small RNAs identify regulatory siRNA clusters induced under drought stress in rice Jung, Inuk; Ahn, Hongryul; Shin, Seon-Ju; Kim, Jukon; Kwon, Hawk-Bin; Jung, Woosuk; Kim, Sun BMC Systems Biology, 10(Suppl 4):115	view file
2016-12	Subtype-specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines Chae, Heejoon; Lee, Sangseon; Nephew, Kenneth P; Kim, Sun BMC Systems Biology, 10(Suppl 4):116	view file DOI
2016-12	Prioritizing biological pathways by recognizing context in time-series gene expression data Lee, Jusang; Jo, Kyuri; Lee, Sunwon; Kang, Jaewoo; Kim, Sun BMC Bioinformatics, 17(Suppl 17):477	view file DOI
2016-12	Prioritizing biological pathways by recognizing context in time-series gene expression data Lee, Jusang; Jo, Kyuri; Lee, Sunwon; Kang, Jaewoo; Kim, Sun BMC Bioinformatics, 17(Suppl 17):477	view file DOI
2016-12	Clustering and evolutionary analysis of small RNAs identify regulatory siRNA clusters induced under drought stress in rice Jung, Inuk; Ahn, Hongryul; Shin, Seon-Ju; Kim, Jukon; Kwon, Hawk-Bin; Jung, Woosuk; Kim, Sun BMC Systems Biology, 10(Suppl 4):115	view file DOI
2018-02	BRCA-Pathway: a structural integration and visualization system of TCGA breast cancer data on KEGG pathways Kim, Inyoung; Choi, Saemi; Kim, Sun BMC Bioinformatics, 19(Suppl 1):42	view file DOI
2018-03	The mRNA and miRNA transcriptomic landscape of Panax ginseng under the high ambient temperature Jung, Inuk; Kang, Hyejin; Kim, Jang Uk; Chang, Hyeonsook; Kim, Sun; Jung, Woosuk BMC Systems Biology, 12(Suppl 2):27	view file DOI
2018-07	Hybrid Approach of Relation Network and Localized Graph Convolutional Filtering for Breast Cancer Subtype Classification Rhee, Sungmin; Seo, Seokjun; Kim, Sun PROCEEDINGS OF THE TWENTY-SEVENTH INTERNATIONAL JOINT CONFERENCE ON ARTIFICIAL INTELLIGENCE, pp.3527-3534	DOI
2019-04	A secure SNP panel scheme using homomorphically encrypted K-mers without SNP calling on the user side Park, Sungjoon; Kim, Minsu; Seo, Seokjun; Hong, Seungwan; Han, Kyoohyung; Lee, Keewoo; Cheon, Jung Hee; Kim, Sun BMC Genomics, 20(Suppl 2):188	view file DOI
2019-10	During adipocyte remodeling, lipid droplet configurations regulate insulin sensitivity through F-Actin and G-Actin reorganization Kim, Jong In; Park, Jeu; Ji, Yul; Jo, Kyuri; Han, Sang Mun; Sohn, Jee Hyung; Shin, Kyung Cheul; Han, Ji Seul; Jeon, Yong Geun; Nahmgoong, Hahn; Han, Kyung Hee; Kim, Jiwon; Kim, Sun; Choe, Sung Sik; Kim, Jae Bum Molecular and Cellular Biology, Vol.39 No.20, p. e00210-19	DOI
2019-12	CaPSSA: visual evaluation of cancer biomarker genes for patient stratification and survival analysis using mutation and expression data Jang, Yeongjun; Seo, Jihae; Jang, Insu; Lee, Byungwook; Kim, Sun; Lee, Sanghyuk Bioinformatics, Vol.35 No.24, pp.5341-5343	DOI
2019-12	HTRgene: a computational method to perform the integrated analysis of multiple heterogeneous time-series data: case analysis of cold and heat stress response signaling genes in Arabidopsis Ahn, Hongryul; Jung, Inuk; Chae, Heejoon; Kang, Dongwon; Jung, Woosuk; Kim, Sun BMC Bioinformatics, (Suppl 16):588	view file link
2019-12	StressGenePred: a twin prediction model architecture for classifying the stress types of samples and discovering stress-related genes in arabidopsis Kang, Dongwon; Ahn, Hongryul; Lee, Sangseon; Lee, Chai-Jin; Hur, Jihye; Jung, Woosuk; Kim, Sun BMC Genomics, 20(Suppl 11):949	view file link
2019-12	Venn-diaNet : venn diagram based network propagation analysis framework for comparing multiple biological experiments Hur, Benjamin; Kang, Dongwon; Lee, Sangseon; Moon, Ji Hwan; Lee, Gung; Kim, Sun BMC Bioinformatics, 20(Suppl 23):667	view file link
2020-02	Impact of mutations in DNA methylation modification genes on genome-wide methylation landscapes and downstream gene activations in pan-cancer Lee, Chai-Jin; Ahn, Hongryul; Jeong, Dabin; Pak, Minwoo; Moon, Ji Hwan; Kim, Sun BMC Medical Genomics, 13(Suppl 3):27	view file DOI
2020-03	Development of genetic quality tests for good manufacturing practice-compliant induced pluripotent stem cells and their derivatives Jo, Hye-Yeong; Han, Hyo-Won; Jung, Inuk; Ju, Ji Hyeon; Park, Soon-Jung; Moon, Sunghwan; Geum, Dongho; Kim, Hyemin; Park, Han-Jin; Kim, Sun; Stacey, Glyn N.; Koo, Soo Kyung; Park, Mi-Hyun; Kim, Jung-Hyun Scientific Reports, Vol.10 No.1, p. 3939	DOI
2020-07	Homologous repair deficiency score for identifying breast cancers with defective DNA damage response Min, Ahrum; Kim, Kwangsoo; Jeong, Kyeonghun; Choi, Seongmin; Kim, Seongyeong; Suh, Koung Jin; Lee, Kyung-Hun; Kim, Sun; Im, Seock-Ah Scientific Reports, Vol.10 No.1, p. 12506	DOI
2021-01	MLDEG: A Machine Learning Approach to Identify Differentially Expressed Genes Using Network Property and Network Propagation Moon, Ji Hwan; Lee, Sangseon; Pak, Minwoo; Hur, Benjamin; Kim, Sun IEEE/ACM Transactions on Computational Biology and Bioinformatics	DOI
2021-01	IDEA: Integrating Divisive and Ensemble-Agglomerate hierarchical clustering framework for arbitrary shape data Ahn, Hongryul; Jung, Inuk; Chae, Heejoon; Oh, Minsik; Kim, Inyoung; Kim, Sun Proceedings - 2021 IEEE International Conference on Big Data, Big Data 2021, pp.2791-2800	DOI
2021-01	A probabilistic model for pathway-guided gene set selection Kim, Inyoung; Lee, Sangseon; Kim, Youngkuk; Namkoong, Hugh; Kim, Sun Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021, pp.2733-2740	DOI
2021-10	Corrigendum: MONTI: A Multi-Omics Non-Negative Tensor Decomposition Framework for Gene-Level Integrative Analysis (Front. Genet, (2021), 12, (682841), 10.3389/fgene.2021.682841) Jung, Inuk; Kim, Minsu; Rhee, Sungmin; Lim, Sangsoo; Kim, Sun Frontiers in Genetics, Vol.12	DOI
2021-12	Spatial Regulation of Reactive Oxygen Species via G6PD in Brown Adipocytes Supports Thermogenic Function Sohn, Jee Hyung; Ji, Yul; Cho, Chang-Yun; Nahmgoong, Hahn; Lim, Sangsoo; Jeon, Yong Geun; Han, Sang Mun; Han, Ji Seul; Park, Isaac; Rhee, Hyun-Woo; Kim, Sun; Kim, Jae Bum Diabetes, Vol.70 No.12, pp.2756-2770	DOI
2022-01	Embedding of FDA Approved Drugs in Chemical Space Using Cascade Autoencoder with Metric Learning Kim, Jungwoo; Lim, Sangsoo; Lee, Sangseon; Cho, Changyun; Kim, Sun Proceedings - 2022 IEEE International Conference on Big Data and Smart Computing, BigComp 2022, pp.363-365	DOI
2022-01	Author Correction: Subnetwork representation learning for discovering network biomarkers in predicting lymph node metastasis in early oral cancer (Scientific Reports, (2021), 11, 1, (23992), 10.1038/s41598-021-03333-5) Kim, Minsu; Lee, Sangseon; Lim, Sangsoo; Lee, Doh Young; Kim, Sun Scientific Reports, Vol.12 No.1, p. 488	DOI
2022-04	AutoCoV: tracking the early spread of COVID-19 in terms of the spatial and temporal patterns from embedding space by K-mer based deep learning Sung, Inyoung; Lee, Sangseon; Pak, Minwoo; Shin, Yunyol; Kim, Sun BMC Bioinformatics, Vol.23 No.SUPPL 3, p. 149	DOI
2022-05	Knowledge-guided artificial intelligence technologies for decoding complex multiomics interactions in cells Lee, Dohoon; Kim, Sun Clinical and Experimental Pediatrics, Vol.65 No.5, pp.239-249	DOI
2022-05	SREBP1c-PARP1 axis tunes anti-senescence activity of adipocytes and ameliorates metabolic imbalance in obesity Lee, Gung; Kim, Ye Young; Jang, Hagoon; Han, Ji Seul; Nahmgoong, Hahn; Park, Yoon Jeong; Han, Sang Mun; Cho, Changyun; Lim, Sangsoo; Noh, Jung-Ran; Oh, Won Keun; Lee, Chul-Ho; Kim, Sun; Kim, Jae Bum Cell Metabolism, Vol.34 No.5, pp.702-+	DOI
2022-06	Adipocyte HIF2α functions as a thermostat via PKA Cα regulation in beige adipocytes Han, Ji Seul; Jeon, Yong Geun; Oh, Minsik; Lee, Gung; Nahmgoong, Hahn; Han, Sang Mun; Choi, Jeehye; Kim, Ye Young; Shin, Kyung Cheul; Kim, Jiwon; Jo, Kyuri; Choe, Sung Sik; Park, Eun Jung; Kim, Sun; Kim, Jae Bum Nature Communications, Vol.13 No.1, p. 3268	DOI
2022-07	Targeted erasure of DNA methylation by TET3 drives adipogenic reprogramming and differentiation Park, Jeu; Lee, Do Hoon; Ham, Seokjin; Oh, Jiyoung; Noh, Jung-Ran; Lee, Yun Kyung; Park, Yoon Jeong; Lee, Gung; Han, Sang Mun; Han, Ji Seul; Kim, Ye Young; Jeon, Yong Geun; Nahmgoong, Han; Shin, Kyung Cheul; Kim, Sung Min; Choi, Sung Hee; Lee, Chul-Ho; Park, Jiyoung; Roh, Tae Young; Kim, Sun; Kim, Jae Bum Nature Metabolism, Vol.4 No.7, pp.918-931	DOI
2022-07	Hepatic GSK3β-Dependent CRY1 Degradation Contributes to Diabetic Hyperglycemia Kim, Ye Young; Jang, Hagoon; Lee, Gung; Jeon, Yong Geun; Sohn, Jee Hyung; Han, Ji Seul; Lee, Won Taek; Park, Jeu; Huh, Jin Young; Nahmgoong, Hahn; Han, Sang Mun; Kim, Jeesoo; Pak, Minwoo; Kim, Sun; Kim, Jong-Seo; Kim, Jae Bum Diabetes, Vol.71 No.7, pp.1373-1387	DOI
2022-08	Genetic analysis of mitochondrial DNA from ancient Equus caballus bones found at archaeological site of Joseon dynasty period capital area Hong, Jong Ha; Oh, Chang Seok; Kim, Sun; Kang, In Uk; Shin, Dong Hoon Animal Bioscience, Vol.35 No.8, pp.1141-1150	DOI
2022-09	Risk Stratification for Breast Cancer Patient by Simultaneous Learning of Molecular Subtype and Survival Outcome Using Genetic Algorithm-Based Gene Set Selection Koo, Bonil; Lee, Dohoon; Lee, Sangseon; Sung, Inyoung; Kim, Sun; Lee, Sunho Cancers, Vol.14 No.17, p. 4120	DOI
2022-11	DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer Shin, Jihye; Piao, Yinhua; Bang, Dongmin; Kim, Sun; Jo, Kyuri International Journal of Molecular Sciences, Vol.23 No.22, p. 13919	DOI
2024-03	DiSCO: Diffusion Schrödinger Bridge for Molecular Conformer Optimization Lee, Danyeong; Lee, Dohoon; Bang, Dongmin; Kim, Sun Proceedings of the AAAI Conference on Artificial Intelligence, Vol.38 No.12, pp.13365-13373	DOI