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Showing results 1 to 21 of 21

Issue Date	Title / Author(s) / Citation	File
2013	Cloud Prediction of Protein Structure and Function with PredictProtein for Debian Kajan, Laszlo; Yachdav, Guy; Vicedo, Esmeralda; Steinegger, Martin; Mirdita, Milot; Angermueller, Christof; Boehm, Ariane; Domke, Simon; Ertl, Julia; Mertes, Christian; Reisinger, Eva; Staniewski, Cedric; Rost, Burkhard BIOMED RESEARCH INTERNATIONAL, Vol.2013	DOI
2017-01	Uniclust databases of clustered and deeply annotated protein sequences and alignments Mirdita, Milot; von den Driesch, Lars; Galiez, Clovis; Martin, Maria J.; Soeding, Johannes; Steinegger, Martin Nucleic Acids Research, Vol.45 No.D1, pp.D170-D176	DOI
2019-07	Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold Steinegger, Martin; Mirdita, Milot; Soeding, Johannes Nature Methods, Vol.16 No.7, pp.603-609	DOI
2019-08	MMseqs2 desktop and local web server app for fast, interactive sequence searches Mirdita, Milot; Steinegger, Martin; Soeding, Johannes Bioinformatics, Vol.35 No.16, pp.2856-2858	DOI
2019-09	HH-suite3 for fast remote homology detection and deep protein annotation Steinegger, Martin; Meier, Markus; Mirdita, Milot; Voehringer, Harald; Haunsberger, Stephan J.; Soeding, Johannes BMC Bioinformatics, Vol.20 No.1, p. 473	DOI
2020-12	Protein Sequence Analysis Using the MPI Bioinformatics Toolkit Gabler, Felix; Nam, Seung-Zin; Till, Sebastian; Mirdita, Milot; Steinegger, Martin; Söding, Johannes; Lupas, Andrei N.; Alva, Vikram Current Protocols in Bioinformatics, Vol.72 No.1, p. e108	DOI
2021-01	DescribePROT: database of amino acid-level protein structure and function predictions Zhao, Bi; Katuwawala, Akila; Oldfield, Christopher J.; Dunker, A. Keith; Faraggi, Eshel; Gsponer, Jorg; Kloczkowski, Andrzej; Malhis, Nawar; Mirdita, Milot; Obradovic, Zoran; Soding, Johannes; Steinegger, Martin; Zhou, Yaoqi; Kurgan, Lukasz Nucleic Acids Research, Vol.49 No.D1, pp.D298-D308	DOI
2021-06	Going to extremes - a metagenomic journey into the dark matter of life Aevarsson, Arnthor; Kaczorowska, Anna-Karina; Adalsteinsson, Bjorn Thor; Ahlqvist, Josefin; Al-Karadaghi, Salam; Altenbuchner, Joseph; Arsin, Hasan; Atlasson, Ulfur August; Brandt, David; Cichowicz-Cieslak, Magdalena; Cornish, Katy A. S.; Courtin, Jeremy; Dabrowski, Slawomir; Dahle, Hakon; Djeffane, Samia; Dorawa, Sebastian; Dusaucy, Julia; Enault, Francois; Fedoy, Anita-Elin; Freitag-Pohl, Stefanie; Fridjonsson, Olafur H.; Galiez, Clovis; Glomsaker, Eirin; Guerin, Mickael; Gundeso, Sigurd E.; Gudmundsdottir, Elisabet E.; Gudmundsson, Hordur; Hakansson, Maria; Henke, Christian; Helleux, Alexandra; Henriksen, Jorn Remi; Hjorleifdottir, Sigridur; Hreggvidsson, Gudmundur O.; Jasilionis, Andrius; Jochheim, Annika; Jonsdottir, Ilmur; Jonsdottir, Lilja Bjork; Jurczak-Kurek, Agata; Kaczorowski, Tadeusz; Kalinowski, Jorn; Kozlowski, Lukasz P.; Krupovic, Mart; Kwiatkowska-Semrau, Karolina; Lanes, Olav; Lange, Joanna; Lebrat, Julien; Linares-Pasten, Javier; Liu, Ying; Lorentsen, Steffen A.; Lutterman, Tobias; Mas, Thibaud; Merre, William; Mirdita, Milot; Morzywolek, Agnieszka; Ndela, Eric Olo; Karlsson, Eva Nordberg; Olgudottir, Edda; Pedersen, Cathrine; Perler, Francine; Petursdottir, Solveig K.; Plotka, Magdalena; Pohl, Ehmke; Prangishvili, David; Ray, Jessica L.; Reynisson, Birkir; Robertsdottir, Tara; Sandaa, Ruth-Anne; Sczyrba, Alexander; Skirnisdottir, Sigurlaug; Soding, Johannes; Solstad, Terese; Steen, Ida H.; Stefansson, Sigmar Karl; Steinegger, Martin; Overa, Katrine Stange; Striberny, Bernd; Svensson, Anders; Szadkowska, Monika; Tarrant, Emma J.; Terzian, Paul; Tourigny, Mathilde; van den Bergh, Tom; Vanhalst, Justine; Vincent, Jonathan; Vroling, Bas; Walse, Bjorn; Wang, Lei; Watzlawick, Hildegard; Welin, Martin; Werbowy, Olesia; Wons, Ewa; Zhang, Ruoshi FEMS Microbiology Letters, Vol.368 No.12, p. fnab067	DOI
2021-07	PredictProtein - Predicting Protein Structure and Function for 29 Years Bernhofer, Michael; Dallago, Christian; Karl, Tim; Satagopam, Venkata; Heinzinger, Michael; Littmann, Maria; Olenyi, Tobias; Qiu, Jiajun; Schuetze, Konstantin; Yachdav, Guy; Ashkenazy, Haim; Ben-Tal, Nir; Bromberg, Yana; Goldberg, Tatyana; Kajan, Laszlo; O'Donoghue, Sean; Sander, Chris; Schafferhans, Andrea; Schlessinger, Avner; Vriend, Gerrit; Mirdita, Milot; Gawron, Piotr; Gu, Wei; Jarosz, Yohan; Trefois, Christophe; Steinegger, Martin; Schneider, Reinhard; Rost, Burkhard Nucleic Acids Research, Vol.49 No.W1, pp.W535-W540	DOI
2021-12	MMseqs2 profile/profile: fast and ultra-sensitive searches beyond the twilight zone Mirdita, Milot; Ji, Hyunjoo; Karin, Eli Levy; Sommer, Hans-Georg; Galiez, Clovis; Soeding, Johannes; Steinegger, Martin BMC BIOINFORMATICS, Vol.22 No.SUPPL 16
2022-06	ColabFold: making protein folding accessible to all Mirdita, Milot; Schutze, Konstantin; Moriwaki, Yoshitaka; Heo, Lim; Ovchinnikov, Sergey; Steinegger, Martin Nature Methods, Vol.19 No.6, pp.679-682	DOI
2023-01	LambdaPP: Fast and accessible protein-specific phenotype predictions Olenyi, Tobias; Marquet, Céline; Heinzinger, Michael; Kröger, Benjamin; Nikolova, Tiha; Bernhofer, Michael; Sändig, Philip; Schütze, Konstantin; Littmann, Maria; Mirdita, Milot; Steinegger, Martin; Dallago, Christian; Rost, Burkhard Protein Science, Vol.32 No.1, p. e4524	DOI
2023-04	Foldcomp: a library and format for compressing and indexing large protein structure sets Kim, Hyunbin; Mirdita, Milot; Steinegger, Martin Bioinformatics, Vol.39 No.4	DOI
2023-05	Cross-phyla protein annotation by structural prediction and alignment Ruperti, Fabian; Papadopoulos, Nikolaos; Musser, Jacob M.; Mirdita, Milot; Steinegger, Martin; Arendt, Detlev Genome Biology, Vol.24 No.1, p. 113	DOI
2023-05	Cross-phyla protein annotation by structural prediction and alignment Ruperti, Fabian; Papadopoulos, Nikolaos; Musser, Jacob M.; Mirdita, Milot; Steinegger, Martin; Arendt, Detlev Genome Biology, Vol.24:113	view file DOI
2023-10	Clustering predicted structures at the scale of the known protein universe Barrio-Hernandez, Inigo; Yeo, Jingi; Jänes, Jürgen; Mirdita, Milot; Gilchrist, Cameron L. M.; Wein, Tanita; Varadi, Mihaly; Velankar, Sameer; Beltrao, Pedro; Steinegger, Martin Nature, Vol.622 No.7983, pp.637-645	DOI
2023-11	AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences Varadi, Mihaly; Bertoni, Damian; Magana, Paulyna; Paramval, Urmila; Pidruchna, Ivanna; Radhakrishnan, Malarvizhi; Tsenkov, Maxim; Nair, Sreenath; Mirdita, Milot; Yeo, Jingi; Kovalevskiy, Oleg; Tunyasuvunakool, Kathryn; Laydon, Agata; Zidek, Augustin; Tomlinson, Hamish; Hariharan, Dhavanthi; Abrahamson, Josh; Green, Tim; Jumper, John; Birney, Ewan; Steinegger, Martin; Hassabis, Demis; Velankar, Sameer Nucleic Acids Research, Vol.52 No.D1, pp.D368-D375	DOI
2023-11	DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options Basu, Sushmita; Zhao, Bi; Biro, Balint; Faraggi, Eshel; Gsponer, Jorg; Hu, Gang; Kloczkowski, Andrzej; Malhis, Nawar; Mirdita, Milot; Soeding, Johannes; Steinegger, Martin; Wang, Duolin; Wang, Kui; Xu, Dong; Zhang, Jian; Kurgan, Lukasz Nucleic Acids Research, Vol.52 No.D1, pp.D426-D433	DOI
2024-02	Fast and accurate protein structure search with Foldseek van Kempen, Michel; Kim, Stephanie S.; Tumescheit, Charlotte; Mirdita, Milot; Lee, Jeongjae; Gilchrist, Cameron L. M.; Soeding, Johannes; Steinegger, Martin Nature Biotechnology, Vol.42 No.2, pp.243-246	DOI
2024-02	Author Correction: Cross-phyla protein annotation by structural prediction and alignment Ruperti, Fabian; Papadopoulos, Nikolaos; Musser, Jacob M.; Mirdita, Milot; Steinegger, Martin; Arendt, Detlev Genome Biology. Vol.25 no.50	view file DOI
2024-05	Petabase-Scale Homology Search for Structure Prediction Lee, Sewon; Kim, Gyuri; Karin, Eli Levy; Mirdita, Milot; Park, Sukhwan; Chikhi, Rayan; Babaian, Artem; Kryshtafovych, Andriy; Steinegger, Martin Cold Spring Harbor perspectives in biology, Vol.16 No.5	DOI